Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0952 ATGGGGCCAAATACCACCACGCTTCCAGTAAATATCGGTGTGGTTCTCGATTCAGACACTTGGATTGGGAAATTAGGTTTGAGCTGCATCCATATGGCCCTCTCTGATTTCTACCATTCCCACACTCACTATAAAACTAGGATTCTTCTCAACATCAAGCATTCCAACACACACCTCATTTCAGCTGCTTCAGCAGGGGTGGAAGCCATCATTGGGCCACAATACTCGAAGCAGGCTAACTTTATTGTTGATGTTGGCAACAAAGCTGAGGTTCCCATCTTATCATTCTCAGCTTCAACCCCTTCTCTAAATAACCCTCCCAATCCTTATTTTTTCCGAGTGGCGCAGAGCGATGCTGCTCAAGTAGCAGCTATTGCAGCAATTGTGGAAGCTTTTGAATGGACTCAAGTGGTGCCCATATACCAAGAAGGCCTATATGGGGAGGAAGTGACCATTTCCATTATTAAAGCCTTTCAAGAGGCAAATGTACGAGTTCCCTATCAAACTGCAATTTCCTCCACAGCCACCGACAAACAAATTATTGAACAACTTGGCAAATTAAGAATGATGTCCAACAGGGTGTTTATTGTGCATATGACACCTATCCTAGGATTTCATGTGTTCACTAAGGCCAGAGAAATTGGGATGATGGAGCAAGACTATGTTTGGATCATGACCACCGCCATGACTAATGTATTAGATTGGACAAATTCTTCACTCACTGATTCATTGCAAGGGGTTTTAGGTGTAGCTACCTATTTTCCAAAATCCCGAAGGCTACAAGATTTTGAAGTTCGATGGAAACTAAAATTTCAACAAGAGAATCCCAGCATCATTGGAGGTGGATTGAATGTTTTGGGTCTGTGGGCTTATGATGCTGCAACCGCACTAGCCATGGCAGTTGAGAAGGCTGGGATTTCAAATATAAGCTTCCCAAAGCCGAATGCTTCTGATTATGATACTCTTGTTGTTGGAGTGTCTCAAAGTGGTCCAATACTACGGGAAACGCTTTCCAAAACCACATTTAAAGGCCTTTCTGGGGAGTTCAGCATGGTGAATGGAGAATTGAAGTCCTCAACTTTTCAGATAATCAATGTAGTTGGGGATGGGAAAAGAGTGGTAGGATTTTGGACACCACAAAAAGGACTGGAAAGAAAACTGAATCACAGAAACGTCAGCACATATTCTGCATCAAAGGCCAATCTGGGACCAATCATATGGGCAGGGGATTCTTCATCTGCACCTAAAGGGTGGGATGTAGCACCAAACGGGAAGAAGCTAAGAATAGGAGTTCCAGTCAAAGTGGAAACTGGATTCAATCGATTGGTTGATGTACATTATGATTCTGGTAATAAAACTGCAAATTTCAGTGGCTATTGCATAGATGTTTTCAAGGCGACAATGGCGGCATTACCATACATCGTTCCTTATGAACTCGCCCCTTTTGAAAGGCCTAATCGTGTCCATGACAGCTTCCACCCAGGTAGATTCTATGATGATTTGATCCGGCAAGTCTATCTTGGGGAATTTGATGCTGTGGTGGGAGATCTAACCATTACATTTGAAAGGTCCTTGTACGTGGACTTCACTTTCCCCTTCACCCAAAGTGGAGCAACATTTATGGTGCCAACCAAAGAGACAAACAAGTCAAAAGCTTGGGTCTTCTTGAAGCCCTTGACATGGCAACTATGGCTCACCAGTGGCTGCTTCTTTGTGTTCATTGGCTTTGTGGTTTGGAGTTACACTGCTAGTTTCACTACTCTTTTGACAGTCCAACAACTCCGACCAGCCGTGACTGATGTAAACCAACTCATACAAAGTGGGGATTCTGTTGGGTACCAGTTTGGTTCCTACACTTACAACTTGTTAAAACAAATGGGGTTTGATGATAGTAGGCTTCAACCTTACAATTCTCCACAAGAATGTGATCACCTCCTAACAATTGGAAACCAAAACGGAGGTATTTCTGCTGCTTTTGACGAAATCCCATATATAAACCTCATTCAGGCCAGTTATTGCTCCAAATACACCACCATTGGACCTGCATTTAAATCTGCAGGATTTGGCTTTGCTTTCCAAAGGAATTCTCCAGTAGTAACAGATGTTTCAAGGGCTATATTAAACTTGACAGAGAAGAATCCAGATATAATGAAGGCAATTGAACACAAATGGTTCACCAATGAGACTGACTGTGTGCAGCCCTCTGCTGTGGATGCTTCCTACAGTCTTGATCTTGATAGCTTCCGTGGACTATTTCTGATTGCAGGAATGGCTTCATCCTCAGCTCTCATTATTCACGCTCTGAACATAACGGTCCCTCTAAATGTGGGTGTACTTGTGGATGCAGACACATGGATTggaaaattgggtttgagcTGCATCAATATGGCCCTCTCCGACTTCTACAATTCTCACACTCACTATAAAACTAGGATTCTTCTCAACATCAAGCATTCCAACACAGACGTCATTGCAGCTGCTTCAGCAGGGGTGGAAGCCATCATAGGACCACAATACTCGAGGCAGGCTAACTTTGTTATGGATGTGGGCAACAAAGCTGAGGTTCCCATTATATCATTTTCAGCCACAAGCCCTTCTCTAAATGATCCTCATTTTTTCCGAGTGGCACAGAGCGAGGGTGCCCAAGTAGGAGCCATTGCAGCAATTGTGGAAGCATTTGGATGGAAGCAAGTGGTGCTCATATACGAAGAAGGCCTATATGGGAAGGAAGTGATACCTTCCTTGATCGAAGCCTTGCAAGAGGTAGATATACGTGTTCCCCATCAAAGTGCAATTTCTGCATCAGCAACGGAGCAACAAATTGTGGAAGAGCTTTACTATTTACGGAGCAACGAAGCTTCGAGAAGCGCTACTCCAAAGTAG 2883 0.4336 MGPNTTTLPVNIGVVLDSDTWIGKLGLSCIHMALSDFYHSHTHYKTRILLNIKHSNTHLISAASAGVEAIIGPQYSKQANFIVDVGNKAEVPILSFSASTPSLNNPPNPYFFRVAQSDAAQVAAIAAIVEAFEWTQVVPIYQEGLYGEEVTISIIKAFQEANVRVPYQTAISSTATDKQIIEQLGKLRMMSNRVFIVHMTPILGFHVFTKAREIGMMEQDYVWIMTTAMTNVLDWTNSSLTDSLQGVLGVATYFPKSRRLQDFEVRWKLKFQQENPSIIGGGLNVLGLWAYDAATALAMAVEKAGISNISFPKPNASDYDTLVVGVSQSGPILRETLSKTTFKGLSGEFSMVNGELKSSTFQIINVVGDGKRVVGFWTPQKGLERKLNHRNVSTYSASKANLGPIIWAGDSSSAPKGWDVAPNGKKLRIGVPVKVETGFNRLVDVHYDSGNKTANFSGYCIDVFKATMAALPYIVPYELAPFERPNRVHDSFHPGRFYDDLIRQVYLGEFDAVVGDLTITFERSLYVDFTFPFTQSGATFMVPTKETNKSKAWVFLKPLTWQLWLTSGCFFVFIGFVVWSYTASFTTLLTVQQLRPAVTDVNQLIQSGDSVGYQFGSYTYNLLKQMGFDDSRLQPYNSPQECDHLLTIGNQNGGISAAFDEIPYINLIQASYCSKYTTIGPAFKSAGFGFAFQRNSPVVTDVSRAILNLTEKNPDIMKAIEHKWFTNETDCVQPSAVDASYSLDLDSFRGLFLIAGMASSSALIIHALNITVPLNVGVLVDADTWIGKLGLSCINMALSDFYNSHTHYKTRILLNIKHSNTDVIAAASAGVEAIIGPQYSRQANFVMDVGNKAEVPIISFSATSPSLNDPHFFRVAQSEGAQVGAIAAIVEAFGWKQVVLIYEEGLYGKEVIPSLIEALQEVDIRVPHQSAISASATEQQIVEELYYLRSNEASRSATPK 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0952 960 SUPERFAMILY Periplasmic binding protein-like I 10 408 IPR028082 -
Sto5g0952 960 Gene3D - 124 278 - -
Sto5g0952 960 Gene3D - 882 955 - -
Sto5g0952 960 Pfam Ligand-gated ion channel 727 758 IPR001320 GO:0015276|GO:0016020
Sto5g0952 960 Gene3D - 793 881 - -
Sto5g0952 960 SMART GluR_14 428 727 IPR001320 GO:0015276|GO:0016020
Sto5g0952 960 Gene3D - 30 123 - -
Sto5g0952 960 Gene3D - 426 557 - -
Sto5g0952 960 PANTHER GLUTAMATE RECEPTOR 2.9 580 767 - -
Sto5g0952 960 PANTHER GLUTAMATE RECEPTOR 2.9 9 579 - -
Sto5g0952 960 PANTHER GLUTAMATE RECEPTOR 2.9 774 951 - -
Sto5g0952 960 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 774 951 - -
Sto5g0952 960 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 580 767 - -
Sto5g0952 960 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 9 579 - -
Sto5g0952 960 Pfam Bacterial extracellular solute-binding proteins, family 3 497 726 IPR001638 -
Sto5g0952 960 Gene3D - 325 425 - -
Sto5g0952 960 CDD PBP1_GABAb_receptor_plant 11 387 IPR044440 -
Sto5g0952 960 SUPERFAMILY Periplasmic binding protein-like II 403 727 - -
Sto5g0952 960 SUPERFAMILY Periplasmic binding protein-like I 774 947 IPR028082 -
Sto5g0952 960 CDD GluR_Plant 425 725 - -
Sto5g0952 960 Gene3D - 597 730 - -
Sto5g0952 960 Pfam Receptor family ligand binding region 60 368 IPR001828 -
Sto5g0952 960 Pfam Receptor family ligand binding region 794 946 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0952 Sto-Chr5 6405613 6412009 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0952 774 948 Ion Channels AT5G11180 43.548 1.26e-42 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0952 K05387 - tcc:18587656 781.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0952 5 6405613 6412009 Sto5g0952 5 6405613 6412009 ECH