Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0950 ATGGTGGTTGATGTTTCTTCTACCATTGGGAAGATGGGATTGAGCTGCATCAACATGTCCCTCTCTCACTTTTATGTCTCTCATTCTCATTACAAAACCAGGCTCATCCTCAGCATCAGGGACTCTCACACTTCAGACCTCATTGCTGTTGCTGCTCAAgCTGTAGATCTGATAAAAACAGAGGAAGTGGAAGCCATAATTGGGGCAATAACATCAACGGAGGCGAACTTCATGATGAGTCTTGGACACAAAACTCACGTCCCCATCATAACATTTACAGCAACAAGTCCCTCTCTTGATTCGCTCAAGGCTTCCTATTTTTTTCGAATTGCACAAAGCGATTCGGCCCAAGTCAATGCCATCACTTCAATCGTGGAAGCTTTTGGGTGGAAAGCAGCCGTCCCCATTTACATAGACAACGATTATGGGAAGGGAGCCATACCCTTCTTCACCAATTCTCTTCAACAGCTCAATGTTCGCATTCCATACCAATATCCCATTTCTCCTTTAGCCTCCGATTCAGACATTACAGCAGAGCTCTACAAGTTGATGACCATGCAGACCAGAGTGTTCCTTCTTCACATCACCCACACTCTTGGCTCTCGTCTCTTCACCATAGCAAAACAGATCGGAATGATGCAGAAAGGCTATGTTTGGATCGTAACCACTGCTTTGGCTAATCTATTAAACGCCTTGGATTCCTCAGTTAAAGAATCAATGCAAGGAGTATTGGGTGTGAGGACCTATGTTCCCCAAACTAAGAGGCTTGAGGATTTCAGAGTTAGATGGAAGAGACAATTCGTACAAGACAATCCAACCCTTGTTGATGAAAATTTGAATGTTTTCGGGTTGTGGGCTTATGATTCTGCCACGGCATTAGCTATGGCTGTTGAGAAGGCTGGCACCAACAATATTGGGTTTAATATGAGCAATGCTTGGGGCAATTCATCAACTGATCTTGAAAGGTTTGGAATTTCAAATAATGGTGAAAAGTTGCGTGAAGCCTTATCAAACACTAGATATAGTGGGCTGAGTGGAGAGTTCAGTATTGCTAAAGGGCAATTGCAAGCATCCACATTTGAGATAATCAATGTGATTGGGGACACTGATTCTATTCCAAAGGGATGGGAAATCCCCACAAATGGAAAAAAGCTGAGGATAGGTGTGCAGCAAAAAGGTTATAATGAATTCGTGAAAGTAACCCGTGATCCAAACACTAATACAATAGAGGTCACTGGATTCAGCATCGACATATTCAAGGCTGTGCTAGAAAAGTTGCCATATGCATTGCCATATGAGTTTATCCCATTTTCAAATCACAATGAATCCCACAGTGACCTTGTTAGGAAAGTTTTCTATAGGAAGTTGGATGCTGTGGTAGGGGATTCTTCAATTATAGCAAGAAGGTTAAAGTATGTGGATTTCACAATGCCATATACCGAGTCAGGAGAGAAAGTGGTGAGCAACTTGGGTAGATTTGTGTTGATCATATGGGTTATTGTGGGTCTAATTCTTGTTCAAAGCTATACCGCGAATTTGACTTCGCTCTTAACAGTTGAACAGCTCACCCCAACAGTAACAGATATGAATCTACTTTTAAACAACAGATTGAATGTTGGTTACTTGAAAGGCTCTTTTGTTTATGCAATGTTGAAGGATAAGGGTTTCCAAGAGCGTCAGCTGAAAAGTTATAATTCTCCTCAAGAATGCCACGACTTGTTCACAAAAGGAAGTGCCAATGGTGGCATTTCTGCAGCATTCGATGAAATTCCCTATGTGAAACTCTTCCTTGGAATTTACTGCTCCATGTATGTAATGGTTGGACCAACTTTAAAGACCGGAGGCTTTGGCTTTGTGTTTCCTAAAGGTTCTCCTCTTGTGGCAGACATTTCAAGGGCAATATTGAATGTAACTCAAGGGgataaaatgaaaacaatagAGAATGCATGGTTGAAGACAAATAGTTGTCCAGAGTCTTCTACTTCTTCTGTTTCCTCAAATAGCCTTGGCCTTGAAAGCTTCTGGGGTCTATTTCTTATTACAGGAGTTGCTTCCATGTTAGCACTAATCATCTTTGCCATTGCATTCCTCTATGAACATAGAAATATCTTGTTCTCCCACAATCCCAATACTTCAATTTGGAGGCGAATTAGGATCTTCTTAAAAATCTTTGACCAAAGAGACCAAAGCTCTCAAACTTTCAGAAGAAAGGAAATGCAAGATAAAGTTTTCAACCTGTGCTGGGCACAGAGGAATACAACAGTGGCAGTAAAAGTGGGAATTGTGGTTGACGTTTCTGCAACAATTGGCAAGGTTGCATTAAGCTGCATCCACATGGCTCTCTCTCATTCTCATTACAACACCACCATCCTCTTCATCATCAGGCACTCTTCCGCTGATGTCCTTTCTACAGCCGCTCatgCTGCAGATCTGATCAAAACAGAGCAAGTGGAAGCCATAATAGGGCCAACAACATCAACATCAACGGAGGCCAACTTCCTCATCACTCTGGGACACGAAGCTCACATCCCCATCATAACATTTTCACCAACAACCCCTTCTCTTCAAAGTCCCTATTTTTTTCACTTCTCACAAATGGATTCAGCTCAAGTAGACGCCATCAGCGCCATCGTCGAAGCTTTTGGGTGGAAATCACTAGTACCCATTTACGTAGACAACGATTATGGGAAGGGACTCATACCCTTCTTAATCAATTCTCTTCAAAATCTCCATGCTCGCATACCCTATCTCTCTCCCATTTCACCTTCAGCCACAGATGAAGACATCAGAGCAGAGCTATACAAGTTGATGGCCAAGCAGACCAGAGTGTTCCTTGTTCATGCGTCTATTGATCTTGGCTCTAAACTTTTCCTCATTGCGAATCAAATTGGAATGATGAGGCAGGGATACGTTTGGATCATAACGGATGGTATGGCCAATGTACTAAACTCTTTGAATTCCTCTGTTATAGAATCAATGCATGGAGTATTGGGTGTGAGGACCTATATTCCCCAAACAAGAGAGCTAGATGACTTTAAAGTTGAATGGAAGAGAAAATTCGTACGAGACAATCCGGACCTTGTTGATACAAATTTAAATGCTTTTGGAGTATGGGCTTATGATGCCACCACAGCATTAGCTATGGCCGTTCAAAAGCTTGGAGTTTCGCTAAATGGTGAACGCCTGCGTGAAGCCTTATCAAACACTAAATTTAGAGGCTTAAGTGGAGAATTCAACGTGGTTGATGGGAAATTGCAAGCATCCACGTTTGAGATAATTAATGTGATTGGTAATGGAGAAAGGAGGGTAGCATTTTGGACGTCACAAAACGGGCTAGTAAAAAATCTGGATTTAAAGAACAAAAGTATAAATGACACATCAAAAGACAATGTAGCACCCATTATATGGCCAGGGGATACGTATTGTATTCCAAAGGGTTGGGAAATTCCAAcaaatgggaaaaagatgaagatAGGAGTCCCAGTGAGAAGGGACTATACTGAATTCGTGAAAATAACACGAGACCCAATCACAAATACGACAATAGAGGTCACTGGGTTTTGCATAGATGTGTTCAAAGCAGTGCTGGAATTGTTGCCTTATGCTTTACCATATGAATTTGTCCCATTTGCAAAGCCCAATGGTGAGAGTGCAGGAACATACGATGAGCTAATAAGCCAAGTTTACTATGGGGTCCAACTATGTCGATTTCACATTGCCTTATACAGAATCTGGGGTTACTATGATTGTCCCAATGAAATACGAGAGAAAGCCGAATGCGTGGGACTTCTTAAAGCCATTAAGATGGGATCTTTGGAAGAAAAAGTGGTGAGCAACTTGGGTAGATTTGTGGTCATTATTTGGATGTTTGTGGTTCAAATTGTGGTGCAGAGCTATACTGCGAGTTTGACATCACTCTTAACAGTTGAGCAACTCCGCCCAAGTATTACAGATGTGCATCAACTGGTAAAGAATAGGCTGAATGTTGGTTGCAAGAAAGGTTCTTTTGAGCAAAAAATATTGAAGGATTTGGGTGTTGAAGACTaccaattcaaattttttaattcgaAACAAGAATGCAATGAGCTACTCACAAAAGGGAGTGAAAAGGGTGGCATTTCTGCTTCATTCGGTGAAATTCCCTACGTCAAACTCTTCCTTCAAACTTACTGCTCCAAGTATACCATGGTGGATCCTCAGTTTAAAACTGGGGGATTAGGCTTTGTATTTCCCAAAGGGTCTCCTCTTGTGGGTGACATTTCAAGGGCAATCCTAAATGTGACACAGggagataaaataaaaacaatcgAGAAAAGATGGTTCAAGAATGGGCATTGCACACAATCTGGTGcctcaatttcttccaacagtCTAGGCCTTGAGAGCTTTTGGGGCTTATTTATGATTGCAGGAGTTGCTTCCGTATTAGCACTCATTGTATTCACTAGTACATTCCTTTATGAGTACAGGCAGATTTGGTTATGGCATGATCCCAATACTCCTATACGGACACGAATTCAGATGTTACTGAAAATGTTTACCCAAAGAGACGAGAGGTGTCATACTTTGAAGAAGAGCAAAACTTGGAATGATGATGGTTTGGGTGAAATTGAGGCCTCTCGGACTACTACATATTGCCCTCCAAGTCCCAATAGTGAAGAAACCCATTCCAAATTTTCTGCCACCACAAGTACTACTCAAGAACTAGAACTAGAATTAGGCCCTGCACAGCAATAA 4737 0.4091 MVVDVSSTIGKMGLSCINMSLSHFYVSHSHYKTRLILSIRDSHTSDLIAVAAQAVDLIKTEEVEAIIGAITSTEANFMMSLGHKTHVPIITFTATSPSLDSLKASYFFRIAQSDSAQVNAITSIVEAFGWKAAVPIYIDNDYGKGAIPFFTNSLQQLNVRIPYQYPISPLASDSDITAELYKLMTMQTRVFLLHITHTLGSRLFTIAKQIGMMQKGYVWIVTTALANLLNALDSSVKESMQGVLGVRTYVPQTKRLEDFRVRWKRQFVQDNPTLVDENLNVFGLWAYDSATALAMAVEKAGTNNIGFNMSNAWGNSSTDLERFGISNNGEKLREALSNTRYSGLSGEFSIAKGQLQASTFEIINVIGDTDSIPKGWEIPTNGKKLRIGVQQKGYNEFVKVTRDPNTNTIEVTGFSIDIFKAVLEKLPYALPYEFIPFSNHNESHSDLVRKVFYRKLDAVVGDSSIIARRLKYVDFTMPYTESGEKVVSNLGRFVLIIWVIVGLILVQSYTANLTSLLTVEQLTPTVTDMNLLLNNRLNVGYLKGSFVYAMLKDKGFQERQLKSYNSPQECHDLFTKGSANGGISAAFDEIPYVKLFLGIYCSMYVMVGPTLKTGGFGFVFPKGSPLVADISRAILNVTQGDKMKTIENAWLKTNSCPESSTSSVSSNSLGLESFWGLFLITGVASMLALIIFAIAFLYEHRNILFSHNPNTSIWRRIRIFLKIFDQRDQSSQTFRRKEMQDKVFNLCWAQRNTTVAVKVGIVVDVSATIGKVALSCIHMALSHSHYNTTILFIIRHSSADVLSTAAHAADLIKTEQVEAIIGPTTSTSTEANFLITLGHEAHIPIITFSPTTPSLQSPYFFHFSQMDSAQVDAISAIVEAFGWKSLVPIYVDNDYGKGLIPFLINSLQNLHARIPYLSPISPSATDEDIRAELYKLMAKQTRVFLVHASIDLGSKLFLIANQIGMMRQGYVWIITDGMANVLNSLNSSVIESMHGVLGVRTYIPQTRELDDFKVEWKRKFVRDNPDLVDTNLNAFGVWAYDATTALAMAVQKLGVSLNGERLREALSNTKFRGLSGEFNVVDGKLQASTFEIINVIGNGERRVAFWTSQNGLVKNLDLKNKSINDTSKDNVAPIIWPGDTYCIPKGWEIPTNGKKMKIGVPVRRDYTEFVKITRDPITNTTIEVTGFCIDVFKAVLELLPYALPYEFVPFAKPNGESAGTYDELISQVYYGVQLCRFHIALYRIWGYYDCPNEIREKAECVGLLKAIKMGSLEEKVVSNLGRFVVIIWMFVVQIVVQSYTASLTSLLTVEQLRPSITDVHQLVKNRLNVGCKKGSFEQKILKDLGVEDYQFKFFNSKQECNELLTKGSEKGGISASFGEIPYVKLFLQTYCSKYTMVDPQFKTGGLGFVFPKGSPLVGDISRAILNVTQGDKIKTIEKRWFKNGHCTQSGASISSNSLGLESFWGLFMIAGVASVLALIVFTSTFLYEYRQIWLWHDPNTPIRTRIQMLLKMFTQRDERCHTLKKSKTWNDDGLGEIEASRTTTYCPPSPNSEETHSKFSATTSTTQELELELGPAQQ 1578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0950 1578 SUPERFAMILY Periplasmic binding protein-like I 9 369 IPR028082 -
Sto5g0950 1578 Gene3D - 1155 1240 - -
Sto5g0950 1578 Gene3D - 379 492 - -
Sto5g0950 1578 Gene3D - 1057 1154 - -
Sto5g0950 1578 MobiDBLite consensus disorder prediction 1540 1578 - -
Sto5g0950 1578 Pfam Ligand-gated ion channel 653 684 IPR001320 GO:0015276|GO:0016020
Sto5g0950 1578 Pfam Ligand-gated ion channel 1272 1473 IPR001320 GO:0015276|GO:0016020
Sto5g0950 1578 SMART GluR_14 1157 1443 IPR001320 GO:0015276|GO:0016020
Sto5g0950 1578 SMART GluR_14 384 653 IPR001320 GO:0015276|GO:0016020
Sto5g0950 1578 Gene3D - 1337 1445 - -
Sto5g0950 1578 Gene3D - 32 357 - -
Sto5g0950 1578 Gene3D - 602 658 - -
Sto5g0950 1578 SUPERFAMILY Periplasmic binding protein-like II 1133 1443 - -
Sto5g0950 1578 CDD GluR_Plant 1154 1441 - -
Sto5g0950 1578 Gene3D - 113 367 - -
Sto5g0950 1578 Pfam Receptor family ligand binding region 787 1097 IPR001828 -
Sto5g0950 1578 Pfam Receptor family ligand binding region 17 367 IPR001828 -
Sto5g0950 1578 Pfam Bacterial extracellular solute-binding proteins, family 3 410 652 IPR001638 -
Sto5g0950 1578 Pfam Bacterial extracellular solute-binding proteins, family 3 1297 1442 IPR001638 -
Sto5g0950 1578 CDD GluR_Plant 383 651 - -
Sto5g0950 1578 Gene3D - 1262 1336 - -
Sto5g0950 1578 CDD PBP1_GABAb_receptor_plant 758 1116 IPR044440 -
Sto5g0950 1578 Gene3D - 868 1031 - -
Sto5g0950 1578 PANTHER GLUTAMATE RECEPTOR 2.9 2 369 - -
Sto5g0950 1578 PANTHER GLUTAMATE RECEPTOR 2.9 367 483 - -
Sto5g0950 1578 PANTHER GLUTAMATE RECEPTOR 2.9 757 1230 - -
Sto5g0950 1578 PANTHER GLUTAMATE RECEPTOR 2.9 484 740 - -
Sto5g0950 1578 PANTHER GLUTAMATE RECEPTOR 2.9 1273 1529 - -
Sto5g0950 1578 SUPERFAMILY Periplasmic binding protein-like II 381 656 - -
Sto5g0950 1578 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 367 483 - -
Sto5g0950 1578 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 484 740 - -
Sto5g0950 1578 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 757 1230 - -
Sto5g0950 1578 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 2 369 - -
Sto5g0950 1578 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1273 1529 - -
Sto5g0950 1578 MobiDBLite consensus disorder prediction 1542 1578 - -
Sto5g0950 1578 CDD PBP1_GABAb_receptor_plant 2 368 IPR044440 -
Sto5g0950 1578 SUPERFAMILY Periplasmic binding protein-like I 757 1147 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0950 Sto-Chr5 6386562 6396685 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0950 484 731 Ion Channels AT5G27100 47.451 8.84e-60 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0950 K05387 - cit:102628154 767.303