Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0928 ATGTCTTCTTCAATCAAACGCTTTTTTGGGATTCCCAGCCAACCCATTTGCAGATACGAGAAGACTTATGAAgatggtgaaaatgagtatcTTAGATATGGTTTATCATCCATGCAAGGGTGGCGGGAAAACATGGAAGATTCTCACGTTGCATTTCCTCGATTTGATGGGGCCACCTCATTTTTTGGTGTTTATGATGGTCATGGAGGTAAGGAGGTTGCAAAGTTTTGTGCTAAGTATTTTCACCAAGTGCTTCTCAACAGTGAAGACTATAGAAATGGAGATATTGAAACCTCTCTTAGGGAAACTTTCTTCAGAATGGATGAGATGATGAGCGGTCAAAGGGGATGGAGGGAATTAGCTATGTTTGGGGGCAAGTTAAAGAAGTTATCTGCGACGATACAAAAATGGATTTGGTCTTCACGAAGGAATCGTGATAATTGGGCTACTGAGAAGGGACTTCATTCTGGTTTTTCTGGACCTCAAGGTACAGGAAGCACTTCCTGCGTTGCAGTAATTAGACACAACCTAGTTGTAGTTGCAAATGCTGGGGACTCACGTGCCGTGTTGTCTAGGGGGGCTCAGGCACTGGATTTGTCTATAGACCACAAACCTACTCTTCAGTCTGAGATCGATAGAATCGAACGGGCTAAAGGTTCTATTAAAGATGGGAGAGTTAATGGCAAGATAGCTATTACTAGAGCTATAGGTGACATGTATTATAAAGAAGCGGCTCTGCCACGCGAAGATCGAATTTTGACTGCCAATCCAGATGTACGCACTGTGCACCTTACTAATGAAGATGAGTTTTTAGTGATAGCGTGTGATGGGCTTTGGGATTGCATGACAAGCCAGGAAATGGTAAATTGTGTGCGTCGTCATTATTTTCTGGTCCCGGAAGGGCACAGACCGCCACTTTCTAGGGTGTGTGCAGGAGCAATTAATGAATGTTGTCCAAGGGAACGTCCTCGTGATGGCAAGGGAGGTGATAACATGACAATGATCTTGGTGTTGTTCAGACAACCTCAATTGAATATTGCCTCTACCAGTGGCAGTGGCAGCACAAGTTGA 1071 0.4332 MSSSIKRFFGIPSQPICRYEKTYEDGENEYLRYGLSSMQGWRENMEDSHVAFPRFDGATSFFGVYDGHGGKEVAKFCAKYFHQVLLNSEDYRNGDIETSLRETFFRMDEMMSGQRGWRELAMFGGKLKKLSATIQKWIWSSRRNRDNWATEKGLHSGFSGPQGTGSTSCVAVIRHNLVVVANAGDSRAVLSRGAQALDLSIDHKPTLQSEIDRIERAKGSIKDGRVNGKIAITRAIGDMYYKEAALPREDRILTANPDVRTVHLTNEDEFLVIACDGLWDCMTSQEMVNCVRRHYFLVPEGHRPPLSRVCAGAINECCPRERPRDGKGGDNMTMILVLFRQPQLNIASTSGSGSTS 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0928 356 SUPERFAMILY PP2C-like 20 341 IPR036457 -
Sto5g0928 356 ProSiteProfiles PPM-type phosphatase domain profile. 32 339 IPR001932 -
Sto5g0928 356 Gene3D - 13 340 IPR036457 -
Sto5g0928 356 Pfam Protein phosphatase 2C 159 295 IPR001932 -
Sto5g0928 356 Pfam Protein phosphatase 2C 32 112 IPR001932 -
Sto5g0928 356 PANTHER PROTEIN PHOSPHATASE 2C 19 346 IPR015655 GO:0004722|GO:0006470
Sto5g0928 356 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 19 346 - -
Sto5g0928 356 ProSitePatterns PPM-type phosphatase domain signature. 61 69 IPR000222 GO:0043169
Sto5g0928 356 CDD PP2Cc 32 339 IPR001932 -
Sto5g0928 356 SMART PP2C_4 22 337 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0928 Sto-Chr5 6255349 6258110 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0928 18 342 PP2C-type Phosphatase Gene Family AT2G25070 53.776 9.42e-124 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0928 K17499 - sind:105164559 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0928 5 6255349 6258110 Sto5g0928 5 6255349 6258110 ECH