Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0902 ATGGTGGCCTTCCTTGACGCTGCCATAGCAGTTGACCTGGCTGTGGCAACTATGGATATGGAGTGGAAGGGCTCATCAACATTGTCTGTGAACATGAGTAGCCTGGTTGAGAGGCTTCGTGTAAGGTCAGATCGCAAACCAGTTTATAATATCGATGATTCGGATGATGATGCTGACTTTTTGCCTGGGAAACCTGGGATTTCTGAGGAAAAGTTTGAGAGGATAGTCAGAAGTGATGCAAAAGAGAATTCATGCCAAGCCTGTGAGGAAGATGGAGATCTTCTTAGCTGTGAAACATGTACATATGCTTACCATTCGAAATGTTTACTTCGACCACTTAAAGCTCCCTTTCCAGACAGTTGGAGGTGTCCTGAATGTGTTAGCCCATTAAATGATATTGAAAAGATATTAGACTGTGAGATACGCCCTACTGCAGTGGGTGATGGCGATGCCTCAAAACCGGGGTCAAAGCAAATGTTTGTTAAACAATATCTTGTTAAGTGGAAGGGAGCATCGTATTTGCACTGCACGTGGGTTCCAGAGAAAGAGTTTTTGAAAGCTTTCAAGTCAAATCCTCGTCTAAAGACAAAAGTAAACAACTTCCACCGTCAAATGGAATCTGCCAATACTTCTGAGGAAGATTCTGTTGCCATTCGACCGGAATGGACCATGGTCGATCGTATACTTGCTAGCAGGGGTTATGGTGACGAGAAGGAATATCTTGTGAAGTGGAAAGAACTTTCATATGATGAATGTTATTGGGAGTCCGAGTCTGATATTTCTGCATTTCAGCCAGAAATAGAAAGATTCACTAAATTTCAGTCTAGGTCTAGGAGAAAAAAGCAGAAAAGTAGTGTTAAGGATGGTGACGAACCAAAGAAGCATCAGAAAGAATTTCAACAATATGAACATAGCCCTGGCTTTCTTACAGGCGGCACTCTACATCCATATCAGCTTGAAGGCTTGAACTTCTTACGTTTCTCTTGGTCTAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTTGGCAAAACCATACAAAGTATTGCTTTTTTAGCATCCCTTTTTGAAGAGAGCGTTTTTCCGCATCTTGTGGTTGCTCCACTATCAACACTTAGAAACTGGGAACGTGAATTTGCAACTTGGGCACCACAAATGAATGTTGTTATGTATGTTGGATCTGCCCAAGCTCGCACTGTTATAAGAGACTATGAATTTTACTTTCCAAAGAAGCAGAAAAagatcaagaaaaagaaatctagTAAAAAAGTTGCTGAAAGCAAGCAGGACAGGATCAAATTTGATGTCCTTTTGACATCATATGAAATGATCAACTTGGACAGTGCATCATTGAAACCTATAATGTGGGAGTGCATGATAGTAGATGAAGGTCACCGTCTCAAAaataaagattcaaaattattttcttcattGAAGCAATATTCTACCAGACATCGTGTACTTTTGACTGGGACTCCTCTTCAGAACAACTTGGATGAACTTTTTATGTTAATGCACTTCCTTGATGCTGGGAAGTTTGGAAGCCTAGAGGAGTTCCAGGAAGAGTTTAAAGATATTAATCAAGAGGAACAGATATCAAGGCTTCACAAAATGCTGGCTCCACATCTCCTTAGAAGATGGTTAATCAGGTATTCTGATCTGATAGTGGTTTTGAtcatgtttcaaaatcttgttcCTCCTTTCTTGAATTACGAATTCTCTAGTAATCTTGTCATTGTAAGTTGTGGTGTCTGCAATCTTTGTGGAGAAACAGGAGTGAAGAAAGATGTGATGAAGGAACTGCCTCCTAAAAAAGAACTTATATTACGGGTTGAATTAAGCAGCAAACAGAAAGAATATTACAAAGCAATTTTAACCcgtaattatcaaatattaactCGACGTGGTGGTGCTCAGATTTCTCTTATCAATGTTGTCATGGAATTGCGCAAACTATGTTGTCATCCTTACATGTTAGAAGGAGTTGATCCAGAGATTGAAGATGCTAAAGAATCATACAAGTATGCTTCCGTTTCATATCATTTCTCTGAGTGCCATGGTGGTTGTCTTTCAGAAACACAGTGTGCTCTGCTTCATGTGGTAGTACATGTTGTTTTATATGTGCTATTATCGGGGATGGTTAACTTGCTTAACCAAATTGGAACATATGGTGCTGTTATGCAGCTGCTGGAATCATCAGGAAAGTTGCAATTGTTGGACAAGATGATGGTGAAACTTAAAGAACAAGGACACAGGGTCCTCATTTATTCACAATTTCAACGCATGTTGGACTTGCTAGAAGATTACTGTACCAGCAAAAAATGGCTGTATGAAAGGATTGATGGCAAGGTTGCTGGAGCTGAAAGGCAAGTAAGGATAGATCGGTTTAATGCAAAAAATTCATCTAGATTTTGCTTTCTTCTTTCTACCAGAGCTGGGGGATTGGGAATAAATCTTGCTACTGCTGACACAGTTATTATATATGACAGCGATTGGAATCCTCATGCTGATCTACAAGCTATGGCTAGAGCTCATCGACTTGGACAAACTAATAAGGTGTTGATTTATAGGCTTATAACACGAGGAACCATTGAAGAAAGGATGATGCAAATGACAAAGAAGAAAATGGTGTTAGAACATTTAGTTGTCGGGAGGCTAAAGGCTCAAAATATCAACCAGGAAGAGTTGGATGATATCATTAGGTATGGCTCGAAGGAGTTATTTGCTGATGAGAATGATGAAGCAGGAAAATCCCGCCAAATTCATTATGATGATGCTTCCATAGATAGATTGCTGGATCGTGAACAAGTTGGAGATGAAGAAGCTGTGgtagatgatgaagatgacgaTTCATTTCTAAAGGCCTTTAAGTGGCTCCTTAGATCATGGTCTTGGTCTGATCTCATGATGTTCCATCTTGCTTGCAAGATTGTAATCTTGGTGGCCAATTTTGAATATATTGACGAAGTTGAGGCTGCTGCGGAGGAGGCAAGGAAGAAAGCAATAGAAAATAATTCTACTGTAAACAGTTCAGATAGAACAAATTACTGGGAGGAGCTGTTGAGGGATAAATATGAAGTGCATAaaattgaagagtttaataCCTTGGGAAAAGGGAAGCGAAACCGAAAATTGATGGCTTCCGTTGAGGAGGATGATCTTGCTGGTCTGGAAGATGTAAGCTCTGACGGTGAAGATGACAATTATGAAGCAGACCTTACTGATGGTGATTCGAATTCAACTGGAACTACTTCTAGTAGAAGGCCTTACAAAAAGAAAGCCCGAGCAGCAGAGAGCACAGAGCCAGTTCCTTTGATGGAAGGTGAAGGGAAATCATTCAAAGTACTTGGTTTTAATCAAAGTCAGAGGGctgcatttgtgcaaattttgaTGAGGTTTGGAGTTGGTGATTATGATTGGAAGGAGTTTGCTGCCCGCCTGAAACAGAAGACATATGAAGAAATCAAGGATTATGGAGCCCTCTTCTTGACTCATATTTCTGAAGATATATCTGATTCCACTACATTCTCAGGTGATGGTGTTCCAAAAGAAGGACTCAGAATACCAGATGTACTTGTTAGGATGGCAGTTCTGATGCTGATAAAGGAAAAAGTGACGTTTGCTTCAGAGAATCCTGAATCTCCACTTTATTCAGATGATATCTTAATGCGATATCCAGGCTTGAAGGGTGGAAAGATATGGAAGGAGGAACATGATTTAGTGTTACTGCGTGCTGTGTTGAAgcATGGTTATGGAAGGTGGCAAGCTATTGTTGATGATAAGGATCTAAAGATTCAAGAGATAATCTGTCAGGAGTTGAATCTTCCCATTATAAATTTACCTGTACCAGGACAAGTTGGTAGCCAGGTGCAAAATGGAGCAAATTCAGCAAGTGTAGAAGCACCTGGCAACCAATCTAGGGACAACGGTGGGAATGACATGGCAGCTGATGGTGCGCATGCTTCTGGTGATGCTAGGAACCAGGCACCGGCATATCAAGAGTCTTCCATATTATATCATTTTAGAGACATGCAGAGAAGACAGGTTGAGTTTGTTAAGAAGAGGGTGCTTCTGTTGGAAAAGGGGCTCTACGCTGAGTATCAGAAAGTTTACTTTGCTGATGATgataaagaagatgaagagacgAATGTAGAATTTAAGAGTGAACCAAAGGTTACGAATGTTCCAAGTTATAAAGAACCGGAGACTGACAAGCAAGTGATTGATCAACTGCCTCAAGTAGAAGAAATAgGTTCAGAGGAAATTTCTGCTGCTGCTTGTGATAATGATACAAATCGATTGGAATTGCCTCGACTTTATAATGAGATGTGCAAGGTTGTGGATGAAAGCAGCTTAAAATCTTTGGCTAAGGGTCCAGCAGAAGGCAGCTTGATGAAGAACGCACATTCCTTAGAAACTATTTGCAATGACATCAGTAGACTTTTATCTCCTACACAACAAAATGATCCCGCTTCAGAGACTGAAATTGTGGAACCTGATAACGCGGCCAACAATGGTAGCAAAAGTATGGTGATGGAGTCGGGAAGCGATGTTGAAATGGGTGAAACTAAGGATGATGGTGTGCTGGATGAGCCGGGGATCGTTGTGCTGGATGACTAA 4623 0.3939 MVAFLDAAIAVDLAVATMDMEWKGSSTLSVNMSSLVERLRVRSDRKPVYNIDDSDDDADFLPGKPGISEEKFERIVRSDAKENSCQACEEDGDLLSCETCTYAYHSKCLLRPLKAPFPDSWRCPECVSPLNDIEKILDCEIRPTAVGDGDASKPGSKQMFVKQYLVKWKGASYLHCTWVPEKEFLKAFKSNPRLKTKVNNFHRQMESANTSEEDSVAIRPEWTMVDRILASRGYGDEKEYLVKWKELSYDECYWESESDISAFQPEIERFTKFQSRSRRKKQKSSVKDGDEPKKHQKEFQQYEHSPGFLTGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEESVFPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSAQARTVIRDYEFYFPKKQKKIKKKKSSKKVAESKQDRIKFDVLLTSYEMINLDSASLKPIMWECMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRWLIRYSDLIVVLIMFQNLVPPFLNYEFSSNLVIVSCGVCNLCGETGVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVDPEIEDAKESYKYASVSYHFSECHGGCLSETQCALLHVVVHVVLYVLLSGMVNLLNQIGTYGAVMQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQRMLDLLEDYCTSKKWLYERIDGKVAGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDDASIDRLLDREQVGDEEAVVDDEDDDSFLKAFKWLLRSWSWSDLMMFHLACKIVILVANFEYIDEVEAAAEEARKKAIENNSTVNSSDRTNYWEELLRDKYEVHKIEEFNTLGKGKRNRKLMASVEEDDLAGLEDVSSDGEDDNYEADLTDGDSNSTGTTSSRRPYKKKARAAESTEPVPLMEGEGKSFKVLGFNQSQRAAFVQILMRFGVGDYDWKEFAARLKQKTYEEIKDYGALFLTHISEDISDSTTFSGDGVPKEGLRIPDVLVRMAVLMLIKEKVTFASENPESPLYSDDILMRYPGLKGGKIWKEEHDLVLLRAVLKHGYGRWQAIVDDKDLKIQEIICQELNLPIINLPVPGQVGSQVQNGANSASVEAPGNQSRDNGGNDMAADGAHASGDARNQAPAYQESSILYHFRDMQRRQVEFVKKRVLLLEKGLYAEYQKVYFADDDKEDEETNVEFKSEPKVTNVPSYKEPETDKQVIDQLPQVEEIGSEEISAAACDNDTNRLELPRLYNEMCKVVDESSLKSLAKGPAEGSLMKNAHSLETICNDISRLLSPTQQNDPASETEIVEPDNAANNGSKSMVMESGSDVEMGETKDDGVLDEPGIVVLDD 1540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0902 1540 SMART ultradead3 310 523 IPR014001 -
Sto5g0902 1540 MobiDBLite consensus disorder prediction 1057 1105 - -
Sto5g0902 1540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 595 904 IPR027417 -
Sto5g0902 1540 SMART helicmild6 765 849 IPR001650 -
Sto5g0902 1540 MobiDBLite consensus disorder prediction 1382 1404 - -
Sto5g0902 1540 CDD SF2_C_SNF 734 860 - -
Sto5g0902 1540 MobiDBLite consensus disorder prediction 1484 1540 - -
Sto5g0902 1540 MobiDBLite consensus disorder prediction 1293 1312 - -
Sto5g0902 1540 Pfam CHD subfamily II, SANT-like domain 1085 1220 IPR009462 GO:0003677|GO:0006338
Sto5g0902 1540 ProSiteProfiles Zinc finger PHD-type profile. 82 129 IPR019787 -
Sto5g0902 1540 Gene3D - 281 553 IPR038718 -
Sto5g0902 1540 MobiDBLite consensus disorder prediction 274 299 - -
Sto5g0902 1540 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 739 900 IPR001650 -
Sto5g0902 1540 ProSiteProfiles Chromo and chromo shadow domain profile. 223 285 IPR000953 -
Sto5g0902 1540 SUPERFAMILY Chromo domain-like 97 207 IPR016197 -
Sto5g0902 1540 SUPERFAMILY Chromo domain-like 210 275 IPR016197 -
Sto5g0902 1540 SMART DUF1086_2 1062 1223 IPR009462 GO:0003677|GO:0006338
Sto5g0902 1540 ProSiteProfiles Chromo and chromo shadow domain profile. 131 213 IPR000953 -
Sto5g0902 1540 SMART PHD_3 84 127 IPR001965 -
Sto5g0902 1540 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 594 1208 - -
Sto5g0902 1540 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 36 547 - -
Sto5g0902 1540 ProSitePatterns Zinc finger PHD-type signature. 85 126 IPR019786 -
Sto5g0902 1540 SMART DUF1087_2 992 1057 IPR009463 -
Sto5g0902 1540 MobiDBLite consensus disorder prediction 1293 1330 - -
Sto5g0902 1540 Gene3D - 1190 1329 - -
Sto5g0902 1540 Pfam PHD-finger 85 127 IPR019787 -
Sto5g0902 1540 Gene3D - 710 949 IPR027417 -
Sto5g0902 1540 Gene3D - 599 686 IPR027417 -
Sto5g0902 1540 SMART chromo_7 221 275 IPR000953 -
Sto5g0902 1540 SMART chromo_7 130 206 IPR000953 -
Sto5g0902 1540 MobiDBLite consensus disorder prediction 1484 1513 - -
Sto5g0902 1540 Pfam Chromo (CHRromatin Organisation MOdifier) domain 133 187 IPR023780 -
Sto5g0902 1540 Pfam Chromo (CHRromatin Organisation MOdifier) domain 224 272 IPR023780 -
Sto5g0902 1540 Pfam SNF2-related domain 334 660 IPR000330 GO:0005524|GO:0140658
Sto5g0902 1540 Gene3D - 129 227 - -
Sto5g0902 1540 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 594 1208 - -
Sto5g0902 1540 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 36 547 - -
Sto5g0902 1540 MobiDBLite consensus disorder prediction 1057 1074 - -
Sto5g0902 1540 Pfam CHD subfamily II, DUF1087 993 1054 IPR009463 -
Sto5g0902 1540 Pfam Helicase conserved C-terminal domain 736 849 IPR001650 -
Sto5g0902 1540 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 326 512 IPR014001 -
Sto5g0902 1540 MobiDBLite consensus disorder prediction 283 299 - -
Sto5g0902 1540 Gene3D - 228 272 - -
Sto5g0902 1540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 303 547 IPR027417 -
Sto5g0902 1540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 128 IPR013083 -
Sto5g0902 1540 CDD CD1_tandem 129 203 - -
Sto5g0902 1540 CDD CD2_tandem 221 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0902 Sto-Chr5 6052186 6070432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0902 336 900 RAD5 or RAD16-like Gene Family AT5G22750 22.794 1.15e-36 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sto5g0902 SNF2_N 7.3e-61 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0902 K11643 - gmx:100790230 2117.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0902 5 6052186 6070432 Sto9g3347 9 33344982 33356986 CCT