Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0901 ATGACGGTGGAGACTAGAATGGAGGATCCCAGAGGCCAGTTTCCTGTAGGAATGCGTGTTCTTGCCGTTGACGATGACCCAACTTGCCTCTTGGTCTTGGAAACTCTGCTTCGGAGATGCCAATATCACGTAACGACCACCAATCAGGCAATAACAGCTTTGAAGATgttaagagaaaacaaaaacaagtttgATCTCGTTATTAGTGATGTCCATATGCCAGACATGGATGGATTTAAGCTGCTTGAACTTGTCGGACTTGAGATGGACCTACCTGTCATAATGTTGTCTGCAAATGGTGATACAAAGCTGGTGATGAAGGGGATTACTCATGGGGCTTGTGACTATCTTCTTAAACCTGTTCGAATTGAGGAGCTAAAGAACATTTGGCAGCATGTAATAAGGAGGAAGAAGTTTGACCcaaaggagaaaaacaacacaAGCAACCAAGACAAGCCTCATTCTGGTAGCAACAACGGATTAGGGTCAGCAGGAGCAGGAAATTCAGATCAGAATGGAAAGATTACCAAGAAAAGGAAGGATcaggatgatgaagaagatgaagagcaTGAGAATGGTCATGACAATGATGACCCTTCAGCCCAGAAGAAGCCCCGTGTTGTTTGGTCTGTAGAACTTCACCGCAAGTTCGTGGCTGCTGTTAATCAGCTAGGCATTGACAAGGCTGTACCTAAAAAAATTCTGGATTTGATGAATGTTGAGAAGCTCACGAGGGAAAATGTGGCAAGCCATCTCCAGAAATATAGGCTGTATCTGAAAAGAATCAGCTGTGTGGCAAACCAGCAAGCTAATATGGTGGCAGCCTTAGGTAGTGCCGATCCATCCTATTTGAGAGTGGGATCTCTGAGTGGGATTAAACATCTTCAACCACTGAATGGTTCTGGACAGTTTCAGAACAATGTTTTCCGATCCCTCCCATATAGTGGAATGATGGGCAGGTTGAACAGTCCGGCTGGTCTTGGTGTTCATGGGTTGCCTTCCTCAGGAATTCTTCAGTTGGGTCATGCACAGAATTTAAACAACCCCATGAATGATCATCTTAAGTTCCAGCCAGCCATAGCTCATCATAATGGTGCTTCACTTCACGGAATGCCGGTGTCTGGAGGGCTCGATCAATTACAAACCAACAAGGTTATTAGTTCAGTTCATGGTCCTGCCACTGGTTTTGATGATAAAACAATTTCTCCTATCTCAAATAAATCACCAGATCCAAGAGCAATGGTAGCCTCCACTTGCTCAAGAACTCCAATTGTGGGTGTCACAAACAATGGGTTGATGCTAGAGCCAAATTCTCTAGACACACAAAGGGGGAGAGGGTATGAGAATCTAGCTTCTGTAGCATCTCAACATTCAGAATTCTCTTTGCCTTTGCTGGATAACCATAGTGGTAGATGTAATGATAATTGGGCTAGTGCTGTCCAGTCATCTGGAATACACACAAATTCCTATTCAACAAATGAATGTTTCCATGCGGGGAATCCAAGTGGTGCTTCATCAATCACTTCACTGTCTAGTCAATCCCATGATTCACTGGCAGATATGCACACCCAAGGACCTATTTTCACTAATAGTACATCAAATGTGGCATATCAAGGGTGGGATGATCATTCTTTGGACTCTCTGATTCCTGCAAATGGTGCTGTTGGTCCATCAAGCTTCCACAGAAACTTGGACTTCAATTTTGGAAATGCTTTAGAAATGAAGCATGAGGGTGTCACAAAATCAGGTGAAGATATCTCATTGAGATCAAATCAGGGGTATGTCATGGACCCCCAGAAGGCACAACAGAGTCGCATATCTAATAATCTTGGTTCACTGGAAGATTTAGTCAGTGCAATGATGAAACAGGATGGGGAGTTCATATGTGATGATTTCTCAGGTGGAACATCTATTTGA 1917 0.4215 MTVETRMEDPRGQFPVGMRVLAVDDDPTCLLVLETLLRRCQYHVTTTNQAITALKMLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKFDPKEKNNTSNQDKPHSGSNNGLGSAGAGNSDQNGKITKKRKDQDDEEDEEHENGHDNDDPSAQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVAALGSADPSYLRVGSLSGIKHLQPLNGSGQFQNNVFRSLPYSGMMGRLNSPAGLGVHGLPSSGILQLGHAQNLNNPMNDHLKFQPAIAHHNGASLHGMPVSGGLDQLQTNKVISSVHGPATGFDDKTISPISNKSPDPRAMVASTCSRTPIVGVTNNGLMLEPNSLDTQRGRGYENLASVASQHSEFSLPLLDNHSGRCNDNWASAVQSSGIHTNSYSTNECFHAGNPSGASSITSLSSQSHDSLADMHTQGPIFTNSTSNVAYQGWDDHSLDSLIPANGAVGPSSFHRNLDFNFGNALEMKHEGVTKSGEDISLRSNQGYVMDPQKAQQSRISNNLGSLEDLVSAMMKQDGEFICDDFSGGTSI 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0901 638 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Sto5g0901 638 SUPERFAMILY Homeodomain-like 202 261 IPR009057 -
Sto5g0901 638 MobiDBLite consensus disorder prediction 150 172 - -
Sto5g0901 638 PIRSF RR_ARR_type-B 1 637 IPR017053 GO:0003677|GO:0003700|GO:0009736
Sto5g0901 638 Gene3D - 17 155 - -
Sto5g0901 638 MobiDBLite consensus disorder prediction 140 203 - -
Sto5g0901 638 CDD REC_typeB_ARR-like 20 134 - -
Sto5g0901 638 Pfam Myb-like DNA-binding domain 206 256 IPR001005 -
Sto5g0901 638 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677
Sto5g0901 638 Gene3D - 200 263 - -
Sto5g0901 638 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 1 621 - -
Sto5g0901 638 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 260 IPR017930 -
Sto5g0901 638 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 621 IPR045279 GO:0009736
Sto5g0901 638 SUPERFAMILY CheY-like 17 140 IPR011006 -
Sto5g0901 638 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Sto5g0901 638 SMART REC_2 18 130 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0901 Sto-Chr5 6047883 6050775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0901 1 635 Response Regulator Gene Family AT2G25180 46.071 4.48e-143 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Sto5g0901 Response_reg 5.5e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0901 - K14491 gmx:100809002 828.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0901 5 6047883 6050775 Sto9g3346 9 33334819 33338674 CCT