Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0897 ATGGCGAGACCACAACAGAGATACCGAGGCGTCCGACAAAGGCATTGGGGCTCTTGGGTGTCGGAGATTCGCCATCCTCTATTGAAGACTAGGATTTGGCTTGGTACCTTCGAAACGGCGGAAGATGCAGCTCGAGCGTACGATGAAGCAGCAAGGCTAATGTGTGGCCCCAGAACCAGAACCAACTTCCCTTACAACCCCAATCTCTCtcactcttcttcttccaagcTTCTCTCTGCTACTTTGACCGCAAAACTCCACAGATGCTACGTGGCTTCCCTCCAAATGACGCGACAACCTTCACTCCCACACCCTTCTCCTCACAACACActgccttctccttcttcttcttcttcttcttcttcaagttCTTCTTCTTCAGTGTCCACAACCACAACGATGGCAGAGGCAGAGAAGAATGGGGAGCAATTCAAGCCACTTGAGGAAGATCACATCCAGCAAATGATTGAGGAGTTGCTCGATTATGGTTCCATTGAGCTCTCCTCTGTTATGGACTGA 519 0.4509 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRTRTNFPYNPNLSHSSSSKLLSATLTAKLHRCYVASLQMTRQPSLPHPSPHNTLPSPSSSSSSSSSSSSSVSTTTTMAEAEKNGEQFKPLEEDHIQQMIEELLDYGSIELSSVMD 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0897 172 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 169 - -
Sto5g0897 172 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Sto5g0897 172 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Sto5g0897 172 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Sto5g0897 172 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 1 169 - -
Sto5g0897 172 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Sto5g0897 172 MobiDBLite consensus disorder prediction 111 138 - -
Sto5g0897 172 MobiDBLite consensus disorder prediction 98 150 - -
Sto5g0897 172 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Sto5g0897 172 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Sto5g0897 172 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Sto5g0897 172 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0897 Sto-Chr5 6008098 6008721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0897 1 171 AP2-EREBP Transcription Factor Family AT5G25190 68.182 2.61e-78 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto5g0897 AP2 6.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0897 - - vvi:100252609 212.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0897 5 6008098 6008721 Sto9g3341 9 33308417 33309057 CCT