Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0890 ATGGCGTACCACAACCATCATCTCTCCCAAGACCTTCCGCTCCACCATTTCACAGAGCAATCTCAGCATCAGcatcagcagcagcagcagaacCAGGGTCTAACAGATAACTCCTTGCGTACCATATTGCCAGACCCCACCACTAAACCCGGCTCcgatccccaccaccaccaccacccactcCAGACCGCACCCAATTGGCTCAACAACGCTCTCCTTCGCACTCACTACACCGACAACAATAACGCCAACGCCAATAACACCACCGCTCCCAACACTACCAACGCCACCAATTTCCTCAACCTCCATACTGCCGCCTCTGACTCCACCGGACCCGCTTCCCAGACCTCCAGTCAATGGCTCGCGCGCCCGATCCTCCACCGGAATCACAGTGACGTCATTGACGACGTCACCGCCGGAGACTCTATCATCGCCGGCGCCACTCTGTCTCACGATTCCCCCGATTTGAAGGCCACCGGCGACAACCTCAATAACAAGAGCGAGGCGGCGGTGGTGGTCGATAGCGGCGCCGCCGGAGACGGATTGATGAACTGGCAGAATGCGAGGTTCAAGGCGGAGATTCTCGCCCACCCGTTGTACGAGCAGCTGCTATCGGCGCACGTGGCTTGCTTGCGGATCGCCACGCCGGTTGACCAGCTGCCCAGGATCGACGCTCAGTTGGCTCAGTCGCAGAATGTGGTGGCCAAGTACTCGGCGTTGGGGCATGGGAGTCAGAGCATGGTTGGAGACGATAAGGAACTCGATCAGTTCATGTCGCACTATGTTTTATTGCTCTGTTCATTCAAAGAACAACTCCAACAACATGTCCGGGTGCATGCCATGGAAGCAGTAATGGCTTGTTGGGAGATAGAGCAGTCCTTACAAAGCTTAACAGGAGTTTCCCCAGGAGAAGGTACGGGGGCAACAATGTCTGATGACGAAGATGAGCAAGTGGATAGTGATGCCAACTTGTTTGATGGTAGTTTGGATGGTTCAGACATGGGATTTGGCCCCCTTATCCCAACGGAGAATGAGAGGTCCCTCATGGAGCGTGTAAGGCAAGAATTAAAGCATGAACTCAAACagGGTTACAAGGAGAAAATTGTGGACATAAGAGAGGAAATTTTGCGCAAGAGACGAGCAGGGAAACTTCCTGGAGACACCACCTCTGTCCTTAAAGCTTGGTGGCAATCTCATTCCAAGTGGCCTTATCCTACAGAGGAAGATAAGGCAAGGTTGGTTCAGGAAACGGGGTTGCAATTGAAGCAGATTAATAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAATCCTTCAACCTCCACGGTTTTGAAGAGCAAGCGCAAAAGGTATGAGATATGA 1368 0.5058 MAYHNHHLSQDLPLHHFTEQSQHQHQQQQQNQGLTDNSLRTILPDPTTKPGSDPHHHHHPLQTAPNWLNNALLRTHYTDNNNANANNTTAPNTTNATNFLNLHTAASDSTGPASQTSSQWLARPILHRNHSDVIDDVTAGDSIIAGATLSHDSPDLKATGDNLNNKSEAAVVVDSGAAGDGLMNWQNARFKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHGSQSMVGDDKELDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDEQVDSDANLFDGSLDGSDMGFGPLIPTENERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKRYEI 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0890 455 Pfam Homeobox KN domain 395 434 IPR008422 GO:0003677|GO:0006355
Sto5g0890 455 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 52 453 - -
Sto5g0890 455 SMART KNOX2_2 244 299 IPR005541 GO:0003677|GO:0005634
Sto5g0890 455 Pfam KNOX2 domain 248 298 IPR005541 GO:0003677|GO:0005634
Sto5g0890 455 SMART KNOX1_2 188 232 IPR005540 GO:0003677|GO:0005634
Sto5g0890 455 MobiDBLite consensus disorder prediction 19 45 - -
Sto5g0890 455 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 52 453 - -
Sto5g0890 455 CDD homeodomain 378 439 IPR001356 GO:0003677
Sto5g0890 455 Pfam KNOX1 domain 191 231 IPR005540 GO:0003677|GO:0005634
Sto5g0890 455 SMART ELK_2 355 376 IPR005539 GO:0003677
Sto5g0890 455 ProSiteProfiles 'Homeobox' domain profile. 375 438 IPR001356 GO:0003677
Sto5g0890 455 MobiDBLite consensus disorder prediction 298 318 - -
Sto5g0890 455 SUPERFAMILY Homeodomain-like 377 440 IPR009057 -
Sto5g0890 455 ProSiteProfiles ELK domain profile. 355 375 IPR005539 GO:0003677
Sto5g0890 455 SMART HOX_1 377 442 IPR001356 GO:0003677
Sto5g0890 455 Pfam ELK domain 355 376 IPR005539 GO:0003677
Sto5g0890 455 Gene3D - 376 437 - -
Sto5g0890 455 MobiDBLite consensus disorder prediction 19 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0890 Sto-Chr5 5953947 5956777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0890 1 452 Homeobox Transcription Factor Family AT5G25220 66.102 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Sto5g0890 KNOX2 1.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0890 - - jre:109008224 676.781