Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0851 ATGGGAGAAACAAAGGACGAAGGATACGAGGAGGAGCTTCTTGACTACgaagaggaagaagacaagGCGCCTGACTCCGTCGGGACTAAAGTCAACGGAGAAGCTGCTAAGAAGGGATATGTTGGTATACACAGCTCAGGATTCAGAGATTTTCTTTTAAAGCCAGAGCTTCTCAGGGCTATAGTGGACTCAGGATTTGAGCATCCGTCTGAAGGCAAACTACCAAATTATCTTTTGCAACATGAATGCATACCTCAAGCAATCCTTGGAATGGATGTATTATGTCAAGCTAAATCAGGAATGGGAAAAACTGCTGTCTTTGTGCTCTCAACTTTGCAGCAGATTGATCCTGTTGCTGGCCAAGTTTCTGCTCTTGTTTTATGTCATACAAGGGAATTGGCTTACCAGATATGTCATGAGTTTGAGAGGTTCAGCACCTACCTGCCTGATCTCAAGGTTGCTGTCTTCTATGGTGGTGTCAATATTAAAGTTCACAAGGATCTGTTGAAAAATGAATGCCCTCATATTGTTGTTGGAACTCCGGGAAGAATACTAGCATTGACCAGGGATAAGGACCTTTCTTTAAAGAATGTTAGGCATTTCATTCTTGATGAATGCGATAAGATGCTGGAATCACTGGACATGAGGAGAGATGTGCAAGAGATTTTCAAGATGACCCCACATGACAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAAGGAAATTCGGCCAGTCTGCAAGAAATTTATGCAAGATCCAATGGAAATTTATGTCGATGATGAAGCCAAGTTGACCCTTCATGGTCTTGTACAGCACTACATCAAATTgaaagaggaggagaagaatcGCAAGTTGAATGATCTTCTTGATGCACTTGACTTCAATCAAGTAGTCATCTTTGTAAAAAGTGTTAGTAGAGCAGCTGAGCTGGACAAACTACTTGTGGAGTGTAACTTCCCTTCTATATGCATCCATTCTGGCATGTCCCAGGAGGAAagGTTGAAGCGTTATAAAGGATTCAAGGAAGGGCATACTAGGATTCTTGTAGCAACAGATTTGGTTGGTAGGGGAATTGACATTGAACGTGTCAACATAGTTATAAACTATGACATGCCTGATTCTGCAGACACATACCTGCACAGGGTTGGAAGAGCTGGAAGGTTTGGCACCAAGGGCCTCGCAATTACATTTGTGTCATGTGCTGCTGATGTTGATGTTCTCAACAATGTTCAATCAAGGTTTGAGGTCGATATAAAGCAGCTTCCTGAGCAGATTGATACCTCTACATACATGCCTTCATAA 1305 0.4092 MGETKDEGYEEELLDYEEEEDKAPDSVGTKVNGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGKLPNYLLQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCAADVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0851 434 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 27 429 - -
Sto5g0851 434 SMART ultradead3 71 273 IPR014001 -
Sto5g0851 434 MobiDBLite consensus disorder prediction 1 30 - -
Sto5g0851 434 CDD SF2_C_DEAD 270 399 - -
Sto5g0851 434 Pfam Helicase conserved C-terminal domain 283 390 IPR001650 -
Sto5g0851 434 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 401 IPR027417 -
Sto5g0851 434 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 84 257 IPR014001 -
Sto5g0851 434 Gene3D - 42 265 IPR027417 -
Sto5g0851 434 SMART helicmild6 309 390 IPR001650 -
Sto5g0851 434 Gene3D - 266 433 IPR027417 -
Sto5g0851 434 Pfam DEAD/DEAH box helicase 79 243 IPR011545 GO:0003676|GO:0005524
Sto5g0851 434 MobiDBLite consensus disorder prediction 1 22 - -
Sto5g0851 434 CDD DEADc_DDX39 45 259 - -
Sto5g0851 434 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE 27 429 - -
Sto5g0851 434 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 269 430 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0851 Sto-Chr5 5699565 5704651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0851 1 434 Eukaryotic Initiation Factors Gene Family AT5G11200 81.933 0.0 750
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0851 K12812 - gmx:100808957 811.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0851 5 5699565 5704651 Sto9g3302 9 33065056 33069091 CCT
Sto5g0851 5 5699565 5704651 Sto5g0851 5 5699565 5704651 ECH
Sto5g0851 5 5699565 5704651 Sto9g3302 9 33065056 33069091 ECH