Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0839 ATGGGTTTTGCGGTTTCCCCATCGATATGCACAAAATCCATGGCCCTTCAATGTTTATCGTCTCCTCAAAGCGAGCGTTTCAGTGTGGCTACTCTGTCTTTGCCACGTACGCCCTTATCCTTCTCCGGCCTCCTATCCTCTCGCGCTCGAAACCTCAGCTCTGCAATTGCCGCCGCATCTTCATCtcgtaaaaagaaaaagaaggtcaACTATTTGCTTCCTTATTTTCCTGTTTCGCCTCCACAGCTTCAAAATTTATCTCATAATCACGTTAAGGGTGGTGATGAGGAGGAGGATGCTTTTGAGCTTCTCTTCAAGCAACTGGAAGAAGATCTCAAAAACGATGATATGTCCTTGGATGACAATGATGATGAGATAAGTGAAGAAGACCTTGCCATGCTTGAACGTGAGTTAGAGGAAGCACTGGGACAAGATGATCCAGAAATGTTAAACTCAATCTTAAATGATACAGAAATTGATAGTGATGTTAataacaaagaagaagaagaagaagaagaagatgatgatgataaggaTGGCAGGTCAGCGAACCTTAGAAACTGGCAACTAAGGAAATTAGCTAAAGCTCTAAAAGCTGGTCGTCGTCGAACAAGTATCAAAAGTCTTGCTGCTGAGCTTTGCCTTGACAGGGCTGTTGTTCTTGAGTTGCTTCGTAACCCTCCTCCAAATCTTTTGATGATGAGTCTTTCATTACCTGATGAGCCTAAAGCAAGAGTGATAGAGCCCGAAACCCAACCCACAGAGACTGTTCATGAAGAAATACGCTCAGATCATGTAGAGCCTGAATCAAAGGCTAAGGTACCTGTTCATGTCATGCAACATAGATGGTCTGCTCAAAAGAGATTGAAACGGGTACATGTAGACACTCTGGAAAGAATTTACAAGAGGACAAAGCGTCCCACTAATGCAATGATCAGTAGCATCGTGCATGTGACCAACCTTCCTCGCCGGAGAGTTGTTAAATGGTTCGAAGACAAACGTGCTGAGGATGATGTTCCAGAGGATCGCATTCCATACCTGCGCTCTGTTCCTGAAGAAGCTGTTTGA 1068 0.4185 MGFAVSPSICTKSMALQCLSSPQSERFSVATLSLPRTPLSFSGLLSSRARNLSSAIAAASSSRKKKKKVNYLLPYFPVSPPQLQNLSHNHVKGGDEEEDAFELLFKQLEEDLKNDDMSLDDNDDEISEEDLAMLERELEEALGQDDPEMLNSILNDTEIDSDVNNKEEEEEEEDDDDKDGRSANLRNWQLRKLAKALKAGRRRTSIKSLAAELCLDRAVVLELLRNPPPNLLMMSLSLPDEPKARVIEPETQPTETVHEEIRSDHVEPESKAKVPVHVMQHRWSAQKRLKRVHVDTLERIYKRTKRPTNAMISSIVHVTNLPRRRVVKWFEDKRAEDDVPEDRIPYLRSVPEEAV 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0839 355 SMART HOX_1 287 344 IPR001356 GO:0003677
Sto5g0839 355 PANTHER ZINC-FINGERS AND HOMEOBOXES RELATED 45 349 - -
Sto5g0839 355 MobiDBLite consensus disorder prediction 162 178 - -
Sto5g0839 355 SUPERFAMILY Homeodomain-like 285 338 IPR009057 -
Sto5g0839 355 Pfam Homeodomain 290 335 IPR001356 GO:0003677
Sto5g0839 355 ProSiteProfiles 'Homeobox' domain profile. 280 340 IPR001356 GO:0003677
Sto5g0839 355 Coils Coil 124 144 - -
Sto5g0839 355 CDD homeodomain 283 335 IPR001356 GO:0003677
Sto5g0839 355 PANTHER HOMEOBOX PROTEIN 8 45 349 - -
Sto5g0839 355 MobiDBLite consensus disorder prediction 155 183 - -
Sto5g0839 355 Gene3D - 282 341 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Sto5g0839 Homeodomain 8.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0839 - - gmx:100798718 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0839 5 5648956 5652232 Sto5g0839 5 5648956 5652232 ECH