Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0805 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATACATGATTACCTAGTAAAGCGGGATTTAAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGGAAAGTATCATCTGATCCTGTTGCTATTGACGCCCCAGGCGGCTTTCTCTTTGAATGGTGGTCTGTTTTTTGGGATATATTTATTGCTAGGACTAATGAGAAGCACTCAGACGTTGCGGCATCTTACATTGAGAACCCTGGTACTGCAAATGCGCTGGCCACAAAGATGTACGAGGAAAGGTTAAAACTTCCTCTTCAGAGGGACTCTTTAGATGATGCAGCAATGAAGCAAAGATTTGGTGAGAACATGGGCCAGCTCTTGGACCCGAGTCAGGCCTCAATATTGAAGTCAGCTACAGCTTCTGGCCAGCCTTCGGGGCAAGTGATGCATGGTGCTGCTGGTGGGATGTCTCAACAAGTTCAAGCTCGTAGTCAGCAATTACCAGGGTCTACTCCGGATATAAAGAGCGAAATAAATCCTGTTTTAACTCCAAGAGCTGCAGGTCCAGAAGGATCATTGATAGGAATTCCTGGATCAAATCAAGGTAGCAATAATTTAACTCTCAAGGGCTGGCCACTGAAAGGGTTGGATCAACTGCGCTCTGGTTTTCTCCAGCAGCAAAAGCCTTATATACAGGCCCCTCAGCCCTTTCATCAACTTCAAATGTTGTCACCACAGCATCAGCAACAGCTTATGCTTGCACAACAAAACTTAGCATCATCATCTGCCAGTGAAGATAGTAGACGACTTAGAATGATCTTGAACAACAGGACTATGGGCGGCTTAAGTAAGGATGGTCTTTTAAACCCTGTTGGTGATGTGGTATCAAATGTTGGATCACCTCTTCAAGCAGGCAGCCCTCTTTTGGCTCGTGGAGATACAGATATGCTTATGAAGCAATCTCAGACTTCAAATCATAACATGCATCAGCAAGACAAAGTGGGGGGTGGTGGTAGTGTCACAGCTGATGGGAGCATGTCAAACTCTTTCAGAGGAAATGATCAGGCTTCCAAAAACCAGACTGGGAGAAAGAGAAAGCAGCCTGTATCTTCTTCTGGTCCTGCCAATAGTTCAGGAACAGCAAATACAGCTGGCCCATCTCCAAGTTCAGCACCctcaacaccttcaactcatACACCTGGTGATGTGATATCGATGCCTGCTATGCCTCATGGTAGTTCTTCGAAGCCTCTAATGATGTTTGGCAGTGATGGCACTGGAACTCTTACATCACCTTCAAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATATGGATCGTTTTGTTGAAGATGGATCTCTTGATGACAATGTTGAGTCTTTTTTATCCCATGATGATACAGACCCTAGAGACGCTGTCAGTCGTAGTATGGATGTAAGCAAAGGCTTCTCGTTTGCTGAAGTAAATTCTGTACGAGCTAGTACTAGCAAAGTCATCTGTTGCCACTTCTCTCCCGATGGGAAATTGCTTGCAAGTGGTGGTCATGACAAAAAGGCTGTTTTATGGTACGCAGATTCTCTCAAGCCGAAAGCTACGCTTGAAGAACATTCATCTCTGATAACTGATGTCCGTTTCAGTCCAACCATGTCCCGTCTTGCAACATCTTCATTTGACAAAACTGTCAGAGTTTGGGATGTTGACAATCCTGGGTATTCGCTTCGCAACTTCACTGGACATTCTGCTTCTGTTATGTCCCTAGATTTTCATCCAAATAAAGATGATCTTATCTGCTCTTGTGACGGTGATGGTGAAATACGATATTGGAGTATAACTAATGGCAGCTGTGCTAGAGTCTCTAAGGGTGGCACTGCCCAGATGAGATTCCAACCTCGTTTAGGGAGGTACCTTGCTGCTGCAGCAGAGAATGTCGTCTCGATACTTGATGTGGAGACACAAGCATGCCGATATTCATTACAGGGACATACAAAGCCAATACATTCTGTGTGTTGGGATCCATCTGGGGAGTTGCTTGCATCTGTCAGTGAAGACTCTGTGAGGGTTTGGACTCTTGGATCAGGGAGTGAAGGGGAATGTGTTCATGAACTAAGCTGTAACGGGAACAAGTTCCACTCGTGCGTCTTCCATCCGACGTATTCTCCGTTGCTGTCTTTGGAGCTATGGAACATGGCCGAGAACAAGACGATGACTCTGTCGGCTCATGATGGGCTAATTGCCGCCTTGGCAGTCTCAACTGTAACCGGTTTGGTCGCTTCGGCCAGTCATGACAAGTTTGTAAAGCTCTGGAAGTAA 2307 0.4521 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSDVAASYIENPGTANALATKMYEERLKLPLQRDSLDDAAMKQRFGENMGQLLDPSQASILKSATASGQPSGQVMHGAAGGMSQQVQARSQQLPGSTPDIKSEINPVLTPRAAGPEGSLIGIPGSNQGSNNLTLKGWPLKGLDQLRSGFLQQQKPYIQAPQPFHQLQMLSPQHQQQLMLAQQNLASSSASEDSRRLRMILNNRTMGGLSKDGLLNPVGDVVSNVGSPLQAGSPLLARGDTDMLMKQSQTSNHNMHQQDKVGGGGSVTADGSMSNSFRGNDQASKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVISMPAMPHGSSSKPLMMFGSDGTGTLTSPSNQLWDDKDLELQADMDRFVEDGSLDDNVESFLSHDDTDPRDAVSRSMDVSKGFSFAEVNSVRASTSKVICCHFSPDGKLLASGGHDKKAVLWYADSLKPKATLEEHSSLITDVRFSPTMSRLATSSFDKTVRVWDVDNPGYSLRNFTGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSITNGSCARVSKGGTAQMRFQPRLGRYLAAAAENVVSILDVETQACRYSLQGHTKPIHSVCWDPSGELLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHSCVFHPTYSPLLSLELWNMAENKTMTLSAHDGLIAALAVSTVTGLVASASHDKFVKLWK 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0805 768 MobiDBLite consensus disorder prediction 316 415 - -
Sto5g0805 768 MobiDBLite consensus disorder prediction 337 397 - -
Sto5g0805 768 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 532 567 - -
Sto5g0805 768 ProSiteProfiles Trp-Asp (WD) repeats profile. 532 567 IPR001680 GO:0005515
Sto5g0805 768 SUPERFAMILY WD40 repeat-like 484 768 IPR036322 GO:0005515
Sto5g0805 768 SMART Lish 8 40 IPR006594 GO:0005515
Sto5g0805 768 ProSitePatterns Trp-Asp (WD) repeats signature. 551 565 IPR019775 -
Sto5g0805 768 SMART WD40_4 568 608 IPR001680 GO:0005515
Sto5g0805 768 SMART WD40_4 729 768 IPR001680 GO:0005515
Sto5g0805 768 SMART WD40_4 483 522 IPR001680 GO:0005515
Sto5g0805 768 SMART WD40_4 525 564 IPR001680 GO:0005515
Sto5g0805 768 SMART WD40_4 650 688 IPR001680 GO:0005515
Sto5g0805 768 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 490 521 - -
Sto5g0805 768 ProSiteProfiles Trp-Asp (WD) repeats profile. 490 531 IPR001680 GO:0005515
Sto5g0805 768 ProSiteProfiles Trp-Asp (WD) repeats profile. 657 697 IPR001680 GO:0005515
Sto5g0805 768 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 81 316 - -
Sto5g0805 768 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 80 - -
Sto5g0805 768 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 319 768 - -
Sto5g0805 768 Pfam WD domain, G-beta repeat 527 564 IPR001680 GO:0005515
Sto5g0805 768 Pfam WD domain, G-beta repeat 571 608 IPR001680 GO:0005515
Sto5g0805 768 Pfam WD domain, G-beta repeat 492 521 IPR001680 GO:0005515
Sto5g0805 768 Pfam WD domain, G-beta repeat 653 687 IPR001680 GO:0005515
Sto5g0805 768 Pfam WD domain, G-beta repeat 731 768 IPR001680 GO:0005515
Sto5g0805 768 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 575 613 - -
Sto5g0805 768 Gene3D - 624 768 IPR015943 GO:0005515
Sto5g0805 768 MobiDBLite consensus disorder prediction 316 330 - -
Sto5g0805 768 CDD WD40 486 768 - -
Sto5g0805 768 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Sto5g0805 768 Pfam LisH 10 36 IPR006594 GO:0005515
Sto5g0805 768 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 80 IPR044716 GO:0003714
Sto5g0805 768 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 81 316 IPR044716 GO:0003714
Sto5g0805 768 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 319 768 IPR044716 GO:0003714
Sto5g0805 768 ProSiteProfiles Trp-Asp (WD) repeats profile. 736 768 IPR001680 GO:0005515
Sto5g0805 768 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 736 768 - -
Sto5g0805 768 Gene3D - 466 623 IPR015943 GO:0005515
Sto5g0805 768 ProSiteProfiles Trp-Asp (WD) repeats profile. 575 617 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0805 Sto-Chr5 5463948 5473517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0805 508 689 U-box Gene Family AT2G33340 32.990 8.41e-18 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Sto5g0805 WD40 0.061 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0805 - - pvy:116133053 1173.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0805 5 5463948 5473517 Sto9g3273 9 32895263 32904472 CCT
Sto5g0805 5 5463948 5473517 Sto5g0805 5 5463948 5473517 ECH