Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0785 ATGCATATCAAATCGGCGCAATCATCGTTTCGGGATCGGACACAGGAGTTTCAGAGTATAGCGGAGAGGCTAAAGAAATCAGTGTCATCTGGATCAGGGCCTAATGGGCCAAGTAGTAGTTCAAGATCGGAGGAACAGCGATCTGCAATCGCAATTCAATCAGAGTTCAATAGGAGGGCTTCCAAGATTGGTTATGGCATACACCAGACGTCACAGAAACTTGCTAAGCTGGCCAAGTTGGCAAAAAGGACTTCAGTTTTTGATGATCCGACCATGGAAATCCAAGAGCTTACAGCAGTTATTAAGCAAGATATTACTGCACTGAACTCTGCCGTTGTGGATCTTCAGCTTCTCAGCAATTCTAGGAACGAAAATGGAAATATCTCCAGTGACACAACCAGTCATTCAACCACTGTAGTGGATGACCTAAAAACCCGTTTGATGAGCGCTACCAAGGAATTTAAAGAAGTCCTCACCATGCGAACGGAGAACTTGAAAGTACATGAGAACAGAAGACAATTGTTTTCTTCTACTGTTTCTAAGGACACTGCAAATCCTTTTGTCCGTCAACGTCCCTTGGCAGCAAGGTCAGCTTCCGGTGCTTCTAATGCCCCAGCACCCCCATGGGCTAGTGGGTCACCATCTTCATCTCAGTTGTTTCCCAAGAAGCAGGTGGACGGGGAGAGTCAACCATTACTGCAGCAGCAGCAACAGCAACAACAGCAGCAATTGGTTCCATTGCAAGACACTTACATGCAAAGCAGAGCTGAAGCTCTTCAGAATGTCGAGTCTACTATTCATGAGTTGAGCAACATCTTTAATCAATTGGCGACACTCGTTTCCCAACAAGGAGAAATTGCCATCAGGATTGATGAGAACATGGACGATACATTGGCAAATGTAGAGGGAGCACAGGGGCAATtgttaaaatatctaaacagcATATCTTCTAATAGATGGCTGATGATCaagatattttttgtattaatattttttctcatGGTTTTCCTATTTTTTGTGGCGTAG 1026 0.4298 MHIKSAQSSFRDRTQEFQSIAERLKKSVSSGSGPNGPSSSSRSEEQRSAIAIQSEFNRRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSAVVDLQLLSNSRNENGNISSDTTSHSTTVVDDLKTRLMSATKEFKEVLTMRTENLKVHENRRQLFSSTVSKDTANPFVRQRPLAARSASGASNAPAPPWASGSPSSSQLFPKKQVDGESQPLLQQQQQQQQQQLVPLQDTYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEIAIRIDENMDDTLANVEGAQGQLLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0785 341 MobiDBLite consensus disorder prediction 204 239 - -
Sto5g0785 341 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 249 311 IPR000727 -
Sto5g0785 341 Pfam SNARE domain 285 337 IPR000727 -
Sto5g0785 341 ProSitePatterns Syntaxin / epimorphin family signature. 255 294 IPR006012 GO:0005484|GO:0006886|GO:0016020
Sto5g0785 341 PANTHER SYNTAXIN 2 340 IPR045242 -
Sto5g0785 341 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 7 26 IPR021538 -
Sto5g0785 341 CDD SNARE_syntaxin5 252 330 - -
Sto5g0785 341 SMART tSNARE_6 244 311 IPR000727 -
Sto5g0785 341 MobiDBLite consensus disorder prediction 21 47 - -
Sto5g0785 341 Gene3D - 51 304 - -
Sto5g0785 341 PANTHER SYNTAXIN-32-LIKE 2 340 - -
Sto5g0785 341 MobiDBLite consensus disorder prediction 193 239 - -
Sto5g0785 341 SUPERFAMILY t-snare proteins 54 304 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0785 Sto-Chr5 5363207 5367602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0785 1 341 SNARE and Associated Proteins AT3G24350 65.565 8.56e-148 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0785 K08490 - gmx:100811494 475.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0785 5 5363207 5367602 Sto5g0785 5 5363207 5367602 ECH