Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0780 ATGGGAGAGGTTGCCGTAATGCAATCTGAGGCTCTGCAGTTTGTCTGCAAAGACTTGAAGCATATGAATTTGAATGAAGTGTATGTTCCACAATCAAATGCAGATTACAATCCAGGAGAAGAATCAAGTCAATCAACAGAACACAACAAGATCAATGACATGCGAGAAAAAGGATATATGCAATATGGATGTGAACATTATCGGAGGAGATGCCAAATCAGAGCCCCCTGTTGCAATGAAGTTTTTGACTGCCGGCATTGTCACAATGAGGCAAAAAATAGTATAAACGTTGATCAGAAGCATAGACATGACATTCCCCGCCATCAAGTCAAACAGGTGATATGTTCACTTTGTGGAACTGAACAAGAGGTTCGGCAGAACTGCATAAATTGTGGTGTTTGTATGGGTAAATACTTCTGTGGGACTTGCAAACTCTTTGATGACGATGTATCTAAGCAGCAGTACCATTGTAATGGCTGTGGCATTTGCAGAGTTGGAGGACGTGAAAATTTCTTCCATTGCTATAAGTGTGGATGTTGTCACTCTATTCTGCTGAAGAATAGTCACCCTTGTGTGGAAGGAGCAATGCATCACGATTGTCCTGTTTGTTTTGAGTATTTATTTGAATCCAGAAATGATGTCATTGTTATGCCCTGTGGACATACAATCCATAAGATCTGCCTGAAGGAAATGAGAGAACATTTCCAGTATGCATGCCCCCTCTGCTCGAAGTCAGTTTGTGATATGTCCAAGGTATGGGAAAAATTTGACATGGAGATTGCTGCTACTCCAATGCCTGAaccatttcaaaataaaatgGTTTGGATACTTTGCAACGATTGCGGAAAAACTTCACACGTTCGGTTCCATATTGTGGCTCAAAAATGTCCGAACTGCAAATCCTACAACACGCGACAAACAAGAGGCTGA 930 0.4075 MGEVAVMQSEALQFVCKDLKHMNLNEVYVPQSNADYNPGEESSQSTEHNKINDMREKGYMQYGCEHYRRRCQIRAPCCNEVFDCRHCHNEAKNSINVDQKHRHDIPRHQVKQVICSLCGTEQEVRQNCINCGVCMGKYFCGTCKLFDDDVSKQQYHCNGCGICRVGGRENFFHCYKCGCCHSILLKNSHPCVEGAMHHDCPVCFEYLFESRNDVIVMPCGHTIHKICLKEMREHFQYACPLCSKSVCDMSKVWEKFDMEIAATPMPEPFQNKMVWILCNDCGKTSHVRFHIVAQKCPNCKSYNTRQTRG 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0780 309 Pfam Zinc-ribbon 247 305 IPR039512 -
Sto5g0780 309 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 18 309 - -
Sto5g0780 309 SUPERFAMILY Zinc hairpin stack 136 193 IPR037275 -
Sto5g0780 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 245 IPR013083 -
Sto5g0780 309 Gene3D - 271 309 - -
Sto5g0780 309 ProSiteProfiles Zinc finger CHY-type profile. 57 133 IPR008913 GO:0008270
Sto5g0780 309 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 18 309 - -
Sto5g0780 309 MobiDBLite consensus disorder prediction 32 51 - -
Sto5g0780 309 Pfam CHY zinc finger 64 145 IPR008913 GO:0008270
Sto5g0780 309 SMART ring_2 200 242 IPR001841 -
Sto5g0780 309 SUPERFAMILY CHY zinc finger-like 61 135 IPR037274 GO:0008270
Sto5g0780 309 ProSiteProfiles Zinc finger RING-type profile. 200 243 IPR001841 -
Sto5g0780 309 SUPERFAMILY RING/U-box 198 246 - -
Sto5g0780 309 Pfam Ring finger domain 199 242 IPR001841 -
Sto5g0780 309 ProSiteProfiles Zinc finger CTCHY-type profile. 135 199 IPR017921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0780 Sto-Chr5 5320540 5323473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0780 62 305 C2H2 Transcription Factor Family AT3G18290 40.400 1.99e-53 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0780 K10144 - gmx:100803569 602.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0780 5 5320540 5323473 Sto9g3258 9 32791642 32794068 CCT
Sto5g0780 5 5320540 5323473 Sto5g0780 5 5320540 5323473 ECH