LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto5g0742	ATGTCTCGTGTGTATGTTGGTAACTTGGATTCTAGAGTCACTGAGAGAGATCTTGAAGACGAATTTCGTGTCTTTGGAGTTATACGGAGTGTCTGGGTTGCACGGAGACCACCTGGCTATGCCTTTATTGATTTTGATGACCGCAGAGATGCGCAGGATGCTATTCGTGAATTGGATGGTAAGAATGGTTGGAGGGTAGAGCTTTCTCACAATTCTAGGGGTGGAAGTGGAGgtggaggtggtggtggtggtcgtGGAGGTGGCCGTGGTCGCTCTGGTGGCTCTGATTTGAAATGTTATGAGTGTGGTGAACCTGGCCATTTTGCTCGTGAATGTCGCATGCGTGGTGGTTCAGGGAGACGTCGTAGCCGCAGTCCACCTCGATTTCGCAGGAGTCCAAGTTATGGCCGAAGGAGTTACAGTCCTCGTGGAGGTCGGTCACCTAGGCGCCGCAGTTTGTCTCCTCGTGGACGCAGCTATAGCAAGTCACCTCCATACCGTGGACGTGAGGAGATTGCAGTACGAGTTTGTTTAATCGGGCGACGCCCTGAGCTTCTACTCTTGGATTCGATTAGTTACTTTGTTGATTTCACAGCTTGTGTTCTATTATCTTTGCAGAATACTTGTAGTTTCGTTACAGGTAATAGTGTCTTTTCAAGGTGTCTTCTGGTACCGCATCATTGGTTTTGTGCGTCTGCATTCACTGGGATTTGGTTCTTGGCTACCCTTCTATGGGATCTTCAATTTTTGAATGGTTGTGGGTCCCAGCCGGCTGCTTGCTTCTGTTTGATTGAGTCTCTCCCCACTTGTGCGCACCTCAAACTCTAA	828	0.4734	MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRGGSGGGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRMRGGSGRRRSRSPPRFRRSPSYGRRSYSPRGGRSPRRRSLSPRGRSYSKSPPYRGREEIAVRVCLIGRRPELLLLDSISYFVDFTACVLLSLQNTCSFVTGNSVFSRCLLVPHHWFCASAFTGIWFLATLLWDLQFLNGCGSQPAACFCLIESLPTCAHLKL	275

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto5g0742	275	ProSiteProfiles	Zinc finger CCHC-type profile.	98	113	IPR001878	GO:0003676\|GO:0008270
	Sto5g0742	275	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	2	73	IPR000504	GO:0003723
	Sto5g0742	275	PANTHER	SERINE/ARGININE RICH SPLICING FACTOR	2	176	-	-
	Sto5g0742	275	SMART	rrm1_1	3	69	IPR000504	GO:0003723
	Sto5g0742	275	MobiDBLite	consensus disorder prediction	66	93	-	-
	Sto5g0742	275	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	4	61	IPR000504	GO:0003723
	Sto5g0742	275	Gene3D	-	1	96	IPR012677	-
	Sto5g0742	275	Gene3D	-	97	142	-	-
	Sto5g0742	275	PANTHER	SERINE/ARGININE-RICH SPLICING FACTOR RSZ22A-LIKE ISOFORM X1	2	176	-	-
	Sto5g0742	275	SUPERFAMILY	RNA-binding domain, RBD	3	93	IPR035979	GO:0003676
	Sto5g0742	275	SMART	c2hcfinal6	98	114	IPR001878	GO:0003676\|GO:0008270
	Sto5g0742	275	SUPERFAMILY	Retrovirus zinc finger-like domains	91	115	IPR036875	GO:0003676\|GO:0008270
	Sto5g0742	275	Pfam	Zinc knuckle	98	113	IPR001878	GO:0003676\|GO:0008270
	Sto5g0742	275	MobiDBLite	consensus disorder prediction	111	165	-	-
	Sto5g0742	275	CDD	RRM_SRSF3_like	3	71	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto5g0742	Sto-Chr5	5013148	5016221	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto5g0742	2	61	Eukaryotic Initiation Factors Gene Family	AT1G49760	40.625	4.46e-06	45.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto5g0742	K12896		-	gmx:100796961	221.476