Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0737 ATGCAACAGAGGCTTAAGCTTCAGCAACAGCAAGCACTCATGCAGCAAGCCTTGCTTCAGCAACAGCAAATGTATCACCCCGGAATGCTAGCAGCTACTTTGTCTCAGATGGAGCCTGTTCCAAGTGGAAATCTGCCTCCTGGATTTGATTCGTCTACATGCCGCAGTGTTTATGTAGGAAATATTCACGTAAATGTCACTGAAAAGCTTCTTGCTGAAGTCTTTCAGAGTGCTGGTCCTCTTGCTGGGTGCAAGCTcattagaaaagaaaagTGTAAGATGGACTTCTCTAACCTGGAATTGGTCATGGTTCATGAAGTGGGGAGCAGTATAAAATTCCCTCAACTGGCTCTTGGTTCTTCCTATGGCTTTGTGGACTACCATGATCGAGCATCTGCAGCACTTGCAATAATGACATTGCATGGACGCCAACTATATGGTCAAGCACTCAAGGTGAATTGGGCATATGCCAATGCTCATAGGGAGGATACTTCAGGTCACTTCAATATATTTGTTGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCATGCTTCTCAGTCTATCCTAGTTGTTCTGATGCAAAGGTTATGTGGGATCTCAAAACTGGTCGGTCAAAAGGATATGGTTTTGTTTCTTTCCGTGATCAGCAGGATGCCCAAAGTGCCATCAATGATATGACTGGTAAGTGGCTGGGAAATAGGCAAATACGATGCAACTGGGGAACTAAGGGAGCTGGTTCAAGTTCCAATGAGGAGAAGAACAATGACACCCAAAATGCTGTTATTCTTACAAATGGATCTTCAGATGGAGGTCAGGAAAATAACAATGAGGATGCTCCTGAAAACAGCCCAGCCTACACCACTGTATATGTTGGCAACCTTCCCCATGATGTAACACAAGCTGAACTCCACTATCAGTTCCATGCACTGGGGGCTGGGGTTATTGAGGAGGTCCGAGTTCAAAGGGATAAAGGTTTTGGATTTGTTAGATACAACACTCACGAAGAGGCAGAGATGGCCATTCAAATGGCTAATGGAAGAATAATTCGTGGGAAGACAATGAAGTGTTCATGGGGTAGCAAGCCAACTCCTCCTGGAACAGCTTCGAATCCGCTGCCTCCTCCTACTCAACCTTATCAAATCCTTCCCACAACTGGGATGAACCAAGGCTACTCTCCCACTGAGTTATTGGCTTATCAGCGCCAACTGGCTGCGGTATCTGGCCTTTCGGGTCAAGCCCTTGTGCACATGACTGGACAACATGGCCTAGCTGCTGCTTCTATTGGCTTAAGCTCTGGGGGATCCCAAGCCATGTATGATGCCTATTCTGGCAATTCTTCTAGGCAGCACCTCATGTACTACCGTTAA 1377 0.4561 MQQRLKLQQQQALMQQALLQQQQMYHPGMLAATLSQMEPVPSGNLPPGFDSSTCRSVYVGNIHVNVTEKLLAEVFQSAGPLAGCKLIRKEKCKMDFSNLELVMVHEVGSSIKFPQLALGSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANAHREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAKVMWDLKTGRSKGYGFVSFRDQQDAQSAINDMTGKWLGNRQIRCNWGTKGAGSSSNEEKNNDTQNAVILTNGSSDGGQENNNEDAPENSPAYTTVYVGNLPHDVTQAELHYQFHALGAGVIEEVRVQRDKGFGFVRYNTHEEAEMAIQMANGRIIRGKTMKCSWGSKPTPPGTASNPLPPPTQPYQILPTTGMNQGYSPTELLAYQRQLAAVSGLSGQALVHMTGQHGLAAASIGLSSGGSQAMYDAYSGNSSRQHLMYYR 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0737 458 CDD RRM2_PUB1 169 243 - -
Sto5g0737 458 CDD RRM3_TIA1_like 290 364 - -
Sto5g0737 458 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 7 96 - -
Sto5g0737 458 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 120 444 - -
Sto5g0737 458 SMART rrm1_1 169 242 IPR000504 GO:0003723
Sto5g0737 458 SMART rrm1_1 56 153 IPR000504 GO:0003723
Sto5g0737 458 SMART rrm1_1 291 360 IPR000504 GO:0003723
Sto5g0737 458 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 364 IPR000504 GO:0003723
Sto5g0737 458 MobiDBLite consensus disorder prediction 264 288 - -
Sto5g0737 458 Gene3D - 268 368 IPR012677 -
Sto5g0737 458 SMART rrm2_1 169 242 IPR003954 GO:0003676
Sto5g0737 458 SMART rrm2_1 291 360 IPR003954 GO:0003676
Sto5g0737 458 Gene3D - 1 165 IPR012677 -
Sto5g0737 458 SUPERFAMILY RNA-binding domain, RBD 162 253 IPR035979 GO:0003676
Sto5g0737 458 Gene3D - 166 267 IPR012677 -
Sto5g0737 458 SUPERFAMILY RNA-binding domain, RBD 39 160 IPR035979 GO:0003676
Sto5g0737 458 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 168 246 IPR000504 GO:0003723
Sto5g0737 458 SUPERFAMILY RNA-binding domain, RBD 279 373 IPR035979 GO:0003676
Sto5g0737 458 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 157 IPR000504 GO:0003723
Sto5g0737 458 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 170 240 IPR000504 GO:0003723
Sto5g0737 458 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 358 IPR000504 GO:0003723
Sto5g0737 458 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 120 444 - -
Sto5g0737 458 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 7 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0737 Sto-Chr5 4969441 4975429 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0737 56 364 Eukaryotic Initiation Factors Gene Family AT1G22760 24.921 9.28e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0737 K13201 - gmx:100777108 762.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0737 5 4969441 4975429 Sto5g0737 5 4969441 4975429 ECH