Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0712 ATGGGAGAAAAGGAATGGTACTTCTTCAGCGTGAGAGATCGAAAATATCCAACGGGAGTGAGAACGAATAGAGCAACGAACACAGGATACTGGAAGACCACAGGCAAAGACAAGGAAATCCTAAACACTCTTACATCGGAGTTGGTGGGAATGAAGAAGACTTTGGTTTTCTACAAAGGCAGAGCTCCACGTGGTGACAAATCCAATTGGCAGGATGAATGGGTGGTATGCAGAGTGTTCCAGAAGAGTGGTGGTGCAAAGAAGTACCCTTCTACTTCTTCCAACCACACAAGactcaataataataatgtcatCAATCCCTACAACTTGGAAATAGCTTCTACCATTAATGTGGGACCACCAATCATGCATCACCATCTGGGTGTACCGGATCCCAACTCTTCTAATTCTCACTTCCACCTTTATGGATCAAGGAACTTGATGAACATGAGCACTACTGCAGATTTTGCAGAGTTTGCTAGGGTTTTCAGAGGAGGAGGGTTTCCTACTCCTACTCCACCACCTGCCTCAACCTCTGCTGCTCCTATCAACCTTCCTATGCAACAACTCTTCAACTACCATGCACCGCCGCCTCCGGGCTTCACGGTTTCCGGCCTTAACTTGAATCTCgccggaggaggaggaggagtagGAGTGGAAGCGGCCACCACGCAACCCCTTTTCCGGCCACATGATCATCATGTGGGGTCCAACATGATGGCGGCTACTGCAGGAGGCACTTCTACTTCTCTTAACGGTGATGTAGGGTATGGTGGGAGTGCAGAAATGAGCAACCCTAATAATAATGTTGCTCCTACCAATAGGTATAATAATATGGGCATCGACCATTGTGTGGATTTTGATAACTACTGGCCTAATTCCTACTAA 888 0.4482 MGEKEWYFFSVRDRKYPTGVRTNRATNTGYWKTTGKDKEILNTLTSELVGMKKTLVFYKGRAPRGDKSNWQDEWVVCRVFQKSGGAKKYPSTSSNHTRLNNNNVINPYNLEIASTINVGPPIMHHHLGVPDPNSSNSHFHLYGSRNLMNMSTTADFAEFARVFRGGGFPTPTPPPASTSAAPINLPMQQLFNYHAPPPPGFTVSGLNLNLAGGGGGVGVEAATTQPLFRPHDHHVGSNMMAATAGGTSTSLNGDVGYGGSAEMSNPNNNVAPTNRYNNMGIDHCVDFDNYWPNSY 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0712 295 ProSiteProfiles NAC domain profile. 1 102 IPR003441 GO:0003677|GO:0006355
Sto5g0712 295 SUPERFAMILY NAC domain 2 82 IPR036093 GO:0003677|GO:0006355
Sto5g0712 295 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 70 - -
Sto5g0712 295 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 71 291 - -
Sto5g0712 295 Pfam No apical meristem (NAM) protein 2 70 IPR003441 GO:0003677|GO:0006355
Sto5g0712 295 Gene3D NAC domain 1 84 IPR036093 GO:0003677|GO:0006355
Sto5g0712 295 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 71 291 - -
Sto5g0712 295 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0712 Sto-Chr5 4852654 4853673 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0712 1 293 NAC Transcription Factor Family AT2G24430 43.450 2.12e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto5g0712 NAM 4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0712 - - lja:Lj1g3v2035130.1 256.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0712 5 4852654 4853673 Sto5g0712 5 4852654 4853673 ECH