Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0677 ATGGGTTCTGAAAATAATTTGGTTAGCTTAGCAGCAAATGAATATGGGCATAGGAATGGTGGAACAGAATTTCAATTGAACAATAGAGTTCAAGAGATCTTTTCTGAAAGTGGCCTTGTCGGGGCTTTAGTTAGCCATGGTCCAGATGTCTGGAGTGTTGGCGTGGCAGAGAAGGAGGGTGTGCACTGCACTGCACCCTATTGTAGCACTGGGAGTAGCAAGGGAACCCATTTCCATGGTGGGCCCCGAACCAAGCTTTATAAACCTTATATGAGTGATTGGCAAGTGAGAGAAACGACGCACAGCCCACCTCatcattttcacaatttcaCTTGCATGCCCTTCCCTAACACTCTCTTTCTCACAAAACCCAGAAACTACAAAACACAAACTCCACCTCACAGTCACTTAATTTTAAGGATGAGTGAAACAGAGAGCAGCTCAAACTCAAACTCAAACTCATTCTCATCTCCACCAACTTCACCATCCTCTCCATCTTCaggcagaggcagaggcagaggTGCGAAAAACTCACTAGTCCCACAGGGGAAAGCTAAAGCTAAAACAGAGGACTCGAATTCCAAAAAGATTCGAGATTCAAGCAGGCACCCTGTGTATCGCGGGGTACGTATGAGGAATTGGGGGAAATGGGTATCGGAAATTCGGGAGCCACGCAAGAAATCGCGCATATGGCTGGGTACATTCTCCACCCCTGAAATGGCGGCCAGAGCACACGACGTCGCTGCTTTGAGCATCAAAGGAAACTCCGCCATTCTCAATTTCCCTCAACTCGCCCACTCCCTCCCTCGCCctgcttctctctctcctcGCGATGTACAGGCTGCCGCAGCAAAAGCCGCTCACATGGATCAATTCGACTTGCCCTCGTCCTCCTTGGAAATGTGTACGGAGTCGGAGGAATTGAGCCAGATTATAGAGTTGCCGAGGTTGGAGGAGAAGTGGGAGTTGAGGAAGGAGTTTGTGTTTGTGGAGTCCTTGTTTGATGGGTGGATGGATCAGCCGCCATGGTTGCAGAGCATGGAAGGTTGTGATGCTTATGTTGTAGCGGATCAGCTGCCTCTACTAGACTCCTCCTCCCTCTGGAAGAAGAATTACTGA 1119 0.4647 MGSENNLVSLAANEYGHRNGGTEFQLNNRVQEIFSESGLVGALVSHGPDVWSVGVAEKEGVHCTAPYCSTGSSKGTHFHGGPRTKLYKPYMSDWQVRETTHSPPHHFHNFTCMPFPNTLFLTKPRNYKTQTPPHSHLILRMSETESSSNSNSNSFSSPPTSPSSPSSGRGRGRGAKNSLVPQGKAKAKTEDSNSKKIRDSSRHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGNSAILNFPQLAHSLPRPASLSPRDVQAAAAKAAHMDQFDLPSSSLEMCTESEELSQIIELPRLEEKWELRKEFVFVESLFDGWMDQPPWLQSMEGCDAYVVADQLPLLDSSSLWKKNY 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0677 372 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 143 348 - -
Sto5g0677 372 CDD AP2 206 262 IPR001471 GO:0003700|GO:0006355
Sto5g0677 372 SUPERFAMILY DNA-binding domain 205 263 IPR016177 GO:0003677
Sto5g0677 372 Gene3D AP2/ERF domain 205 263 IPR036955 GO:0003700|GO:0006355
Sto5g0677 372 SMART rav1_2 205 268 IPR001471 GO:0003700|GO:0006355
Sto5g0677 372 MobiDBLite consensus disorder prediction 188 204 - -
Sto5g0677 372 MobiDBLite consensus disorder prediction 142 204 - -
Sto5g0677 372 PRINTS Ethylene responsive element binding protein signature 206 217 IPR001471 GO:0003700|GO:0006355
Sto5g0677 372 PRINTS Ethylene responsive element binding protein signature 228 244 IPR001471 GO:0003700|GO:0006355
Sto5g0677 372 MobiDBLite consensus disorder prediction 142 171 - -
Sto5g0677 372 Pfam AP2 domain 204 254 IPR001471 GO:0003700|GO:0006355
Sto5g0677 372 ProSiteProfiles AP2/ERF domain profile. 205 262 IPR001471 GO:0003700|GO:0006355
Sto5g0677 372 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 143 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0677 Sto-Chr5 4588812 4591535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0677 184 348 AP2-EREBP Transcription Factor Family AT5G11590 56.842 7.34e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto5g0677 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0677 K09286 - jre:109009494 241.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0677 5 4588812 4591535 Sto5g0677 5 4588812 4591535 ECH