Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0673 ATGGAAGAATCTGAGTATTTGCAGGGTAAGTTTTGCCAACAATTCACCTCCGACACCAAGATGGGTTCAGGCGACCATTTCATGGTGGAGGACCTGCTTGACTTCTCCAACGACGACGCTATCATCACCGAAGACTCTCTTCCCGCCAACTCCACCGATTCTTCCACTCTCAACGCTCTCCATACCTCCAATTCCTCTTCCTTCTCTGATAATTTTCTCCCCAATTTACCCCATCCTAATTTCTCCACCGACCTCTGCGTTCCGTGTGATGATGTAGCGGAGCTGGAATGGCTGTCGAATTTCGTGGAGGAATCATTTTCGAGCGACGACCTGCAGAAGCTTCAGCTGATATCGGGCACGAAAGCCCGAAATGACGAAGCATCACAAGCCCACGGGTTTCAGAATGAGCCCAACAGAAACAACAATAACATCTTCTTCACCCCGGAAGTGTCGAAGTCCGCCACCAGGAAGAAGGACGCCCCCGACGATGGCTCCGGCGAGGGCCGCAAGTGCCTGCATTGCGCTACGGATAAGACCCCCCAGTGGCGGACCGGGCCCATGGGTCCCAAAACGCTGTGCAATGCGTGCGGAGTGAGGTACAAGTCGGGGCGTCTGGTGCCGGAGTACCGGCCGGCGGCCAGCCCCACGTTTGTGCTGACGAAGCATTCGAACTCGCACCGGAAGGTGCTGGAGCTCCGACGACAGAAGGAGATGGTGATGGCCCAGCAACATCAGCAGTTTCTGCAACATCAGAACATGATGTTTGATGTGTCCAACGGTGACGATTTCTTGATCCACCAACACGTGGGCCCCGATTTCAGGCACTGGATCTAG 834 0.5468 MEESEYLQGKFCQQFTSDTKMGSGDHFMVEDLLDFSNDDAIITEDSLPANSTDSSTLNALHTSNSSSFSDNFLPNLPHPNFSTDLCVPCDDVAELEWLSNFVEESFSSDDLQKLQLISGTKARNDEASQAHGFQNEPNRNNNNIFFTPEVSKSATRKKDAPDDGSGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVMAQQHQQFLQHQNMMFDVSNGDDFLIHQHVGPDFRHWI 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0673 277 Gene3D - 164 215 IPR013088 GO:0006355|GO:0008270
Sto5g0673 277 MobiDBLite consensus disorder prediction 152 168 - -
Sto5g0673 277 CDD ZnF_GATA 170 217 IPR000679 GO:0006355|GO:0043565
Sto5g0673 277 SMART GATA_3 165 215 IPR000679 GO:0006355|GO:0043565
Sto5g0673 277 ProSiteProfiles GATA-type zinc finger domain profile. 165 201 IPR000679 GO:0006355|GO:0043565
Sto5g0673 277 MobiDBLite consensus disorder prediction 122 150 - -
Sto5g0673 277 PANTHER GATA TRANSCRIPTION FACTOR 1 153 - -
Sto5g0673 277 PANTHER GATA TRANSCRIPTION FACTOR 152 277 - -
Sto5g0673 277 MobiDBLite consensus disorder prediction 122 168 - -
Sto5g0673 277 PIRSF Txn_fac_GATA_plant 121 261 IPR016679 GO:0003677|GO:0005634|GO:0045893
Sto5g0673 277 PIRSF Txn_fac_GATA_plant 11 160 IPR016679 GO:0003677|GO:0005634|GO:0045893
Sto5g0673 277 Pfam GATA zinc finger 171 204 IPR000679 GO:0006355|GO:0043565
Sto5g0673 277 ProSitePatterns GATA-type zinc finger domain. 171 196 IPR000679 GO:0006355|GO:0043565
Sto5g0673 277 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 167 229 - -
Sto5g0673 277 PANTHER GATA TRANSCRIPTION FACTOR 152 277 - -
Sto5g0673 277 PANTHER GATA TRANSCRIPTION FACTOR 1 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0673 Sto-Chr5 4554731 4555968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0673 22 277 C2C2-Gata Transcription Factor Family AT4G32890 46.557 6.62e-78 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sto5g0673 GATA 2.3e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0673 - - vvi:100266300 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0673 5 4554731 4555968 Sto5g0673 5 4554731 4555968 ECH