Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0672 ATGATGGCGGTGAGTTCGGCGTGCAAGCCGGGAATGGACAACGGCAAGTATGTGAGGTACACACCTGAGCAGGTGGAAGCCCTTGAGAGGCTTTATCACGAATGCCCCAAACCCAGTTCCATGCGCCGCCACCAGCTCATCAGAGACTGTCCCATTCTCTCTAATATCGAGCCCAAGCAGATCAAGGTTTGGTTCCAGAATCGAAGATGTAGAGAGAAGCAGCGGAAAGAAGCCTCACGGCTACAAGCGGTAAACAGGAAACTGACAGCTATGAATAAATTGCTGATGGAGGAAAACGACAGATTGCAGAAACAGGTGTCACACCTGGTTTACGAGAACAGCTTTTTCCGCCAACAACCTCACAATACGACGCTCGCGACCACAGACACAAGTTGCGAGTCGGTGGTGACCAGCGGTCAGCACCATTTGACGCCTCAGCATCCACCAAGGGATGCTAGCCCAGCTGGACTTTTGTCCATGGCAGAGGAGACTCTAGCAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCCCTGGAGTGGCAGCACGTGCCTGCGGCCTTGTGGGTCTGGAACCCACGAGGGTTGCGGAAATCCTCAAAGATCGGTGCTCATGGTTTCGTGATTGCCGAGCTGTGGATGTTCTAAATGCCATGCCCATTGGAAATGGGGGATCCATTGAACTGCTTTACATGCAGTTGTATGCGCCAACAACTTTGGCTCCAGCTCGTGACTTCTTGTTACTGCGCTACACTTCTGTTTTGGAGGATGGTAGTCTTGTTGTATGTGAAAGATCACTTCACAATACTCAGAATGGGCCTACTATGCCACCAGCGCAGCATTTTGTTAGAGCAGATATGCTTCCCAGCGGGTATCTGATTAGACCTTGTGAAGGAGGTGGATCCATCATTCATATTGTTGATCACATGAATTTAGAGCCTTGGAGTGTGCCTGAAGTGTTACGCCCACTTTATGAGTCATCAACATTGCTTGCTCAAAAGACAGCTATGGCGATTTCTCAAGAAGTTTCTCAGCCAAATGTCACAGGATGGGGAAGAAGGCCTGCAGCTCTACGAGCACTTAGTCAGCGTTTGAGCAAGGGCTTCAATGAAGCTGTCAATGGGTTTGCAGATGATGGCTGGTCCATGTTAGAAAGTGATGGCATTGATGATGTCACCCTTCTTGTGAATTCATCTCCTAACAAGATGATGGGAGCAAATCTTGGTTATAACAATGGATTTCTTTCAATAAGCAGTTCAGTACTATGTGCAAAGGCATCCATGTTATTACAGAATGTTCCTCCAGCAATTCTTCTTAGATTCTTGCGGGAGCATCGATCAGAGTGGGCAGATAGCAGTATAGATGCTTACTCAGCTGCTGCCATTAAAGCTGGTCCCTGTACCTTGCCAGGGGTCCGAGCAGGAGGTTTTGGGGGTCAGTTTATGGAGGTCATTAAGCTTGAAAATATGGGATATTATAGAGACGACATGGCTATTCCTGGTGATATTTTCCTCTTGCAACTTTGTAGTGGAGTGGATGAGCGTGCAGTTGGTACCTGTGCAGAACTCATATTTGCTCCCATGGATGCATCTTTCTCTGATGATGCACCCATTTTGCCTTCTGGATTCCGCATAATACCTATTGATTCGAGCATGGATACTGCCACTCCAAACCGTACACTTGATCTTGCTTCTGCTCTCGAAGTTGGAACTACTGGAAACAAATCAGCTGGTGACAATTTTGGTAAATCTGGGAGTGCAAAATCTGTCATGACAATAGCATTCCAGTTTGCATTTGAAGTCCATCTTCAAGATAGCATAGCAACTATGGCCCGGCAGTATGTTCGCAGTATTATTGCATCTGTTCAGAGGGTTGCATTAGCACTCTCCCCTTCACATTTTGGTTCTCAAAATGCTATTCGCCCACCACCTGGCACTCCCGAGGCACAAACACTTGCTCAGTGGATCTGTAACAGCTATAGGTGCTATCTGGGGGTCGAACTTTTCAAATGCGAAGGCAGCGAATCTATTCTCAATTCCTTTTGGCATCACTCTGATGCAATCATGTGCTGTTCTTTAAAGGCTTTGCCAGTTTTTACATTTGCAAATCAAGCTGGACTTGACATGCTTGAGACGACCTTGGTTGCTCTTCAAGACATCACTCTGGATAAAATTTTTGACGACAATGGAAAGAAAACCTTGTTCTCTGAGTTCCCTCAGATAATGCAGCAGGGTTTTATGTGTATTGAAGGAGGTATCTGTTTGTCCAGCATGGGAAGGCCAGTGTCCTACGAGAGAGCAGTGGCGTGGAAAGTAATGAACGAAGAAGAAACAGCTCATTGTATCTGTTTTATGTTCGTCAACTGGTCTTTTGTCTGA 2448 0.469 MMAVSSACKPGMDNGKYVRYTPEQVEALERLYHECPKPSSMRRHQLIRDCPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSHLVYENSFFRQQPHNTTLATTDTSCESVVTSGQHHLTPQHPPRDASPAGLLSMAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPTRVAEILKDRCSWFRDCRAVDVLNAMPIGNGGSIELLYMQLYAPTTLAPARDFLLLRYTSVLEDGSLVVCERSLHNTQNGPTMPPAQHFVRADMLPSGYLIRPCEGGGSIIHIVDHMNLEPWSVPEVLRPLYESSTLLAQKTAMAISQEVSQPNVTGWGRRPAALRALSQRLSKGFNEAVNGFADDGWSMLESDGIDDVTLLVNSSPNKMMGANLGYNNGFLSISSSVLCAKASMLLQNVPPAILLRFLREHRSEWADSSIDAYSAAAIKAGPCTLPGVRAGGFGGQFMEVIKLENMGYYRDDMAIPGDIFLLQLCSGVDERAVGTCAELIFAPMDASFSDDAPILPSGFRIIPIDSSMDTATPNRTLDLASALEVGTTGNKSAGDNFGKSGSAKSVMTIAFQFAFEVHLQDSIATMARQYVRSIIASVQRVALALSPSHFGSQNAIRPPPGTPEAQTLAQWICNSYRCYLGVELFKCEGSESILNSFWHHSDAIMCCSLKALPVFTFANQAGLDMLETTLVALQDITLDKIFDDNGKKTLFSEFPQIMQQGFMCIEGGICLSSMGRPVSYERAVAWKVMNEEETAHCICFMFVNWSFV 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0672 815 CDD START_ArGLABRA2_like 154 363 - -
Sto5g0672 815 Pfam START domain 160 366 IPR002913 GO:0008289
Sto5g0672 815 ProSiteProfiles 'Homeobox' domain profile. 11 75 IPR001356 GO:0003677
Sto5g0672 815 Coils Coil 71 105 - -
Sto5g0672 815 Pfam Homeodomain 16 74 IPR001356 GO:0003677
Sto5g0672 815 Gene3D - 11 82 - -
Sto5g0672 815 ProSiteProfiles START domain profile. 150 351 IPR002913 GO:0008289
Sto5g0672 815 SUPERFAMILY Bet v1-like 160 352 - -
Sto5g0672 815 Gene3D - 194 366 IPR023393 -
Sto5g0672 815 PANTHER CLASS III HD-ZIP PROTEIN CNA1 9 815 - -
Sto5g0672 815 SMART START_1 159 369 IPR002913 GO:0008289
Sto5g0672 815 CDD homeodomain 16 76 IPR001356 GO:0003677
Sto5g0672 815 SMART HOX_1 13 79 IPR001356 GO:0003677
Sto5g0672 815 Pfam MEKHLA domain 674 814 IPR013978 -
Sto5g0672 815 CDD bZIP 68 107 - -
Sto5g0672 815 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 9 815 IPR044830 GO:0003700
Sto5g0672 815 SUPERFAMILY Homeodomain-like 14 79 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0672 Sto-Chr5 4537209 4543413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0672 12 815 Homeobox Transcription Factor Family AT4G32880 78.140 0.0 1349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sto5g0672 START 2.9e-49 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0672 K09338 - gmx:100815727 1459.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0672 5 4537209 4543413 Sto5g0672 5 4537209 4543413 ECH