Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0618 ATGGGTACTGGTTGGAGAAGAGCGTTTTGCAGTCGTGACCCGGAATCTACCATATCCAACAATAAGCACAACAGAAGCACAAGTCCAAGTCATAGCCCAAGCCCCAGAAGCTGCGTACGATTGGGGTTTCTCTCCGGTGGTAGCAACCCCACCACTCCTCGTTTGCGTTGCCGAACAGTTTCGGAAGCAGCTGCTCAAGCAAATGACAGCCCAAGACTTCATAGCAAGAGTAGTACTCCCAGGGCAACCAAGTCGCCTAAAACCACATCCCTCTCGAATCCTACCTCTCCTCGCTCTCCTTTGAAGTTGTCTCTGTTCAAGAACAGCTTCAAATTTAGAAGCAGTTGTGGAATCTGTTTGAGCAGCGTGAAGACAGGTCAAGGAACCGCCATTTACACTGCAGAATGTGGTCACGCCTTTCACTTTCCCTGTATTGCTGCTCATGTACGCAAGCATGGGAGTCTCGTCTGTCCCGTCTGCAGCGCCACCTGGAAAGATGTGCCTCTTCTTGCCGTACACAAGAATCTTGCCTCTGATTCCGCCGAATCAAACGTCGTCGTCGATAACACAACGCAAGTTGAGCCATCCCAGCAACAACCTCCAAAGCAGCAATCCGAATCGTACAGATCCTACAACGACGACGAGCCACTTCTGTCTCCTACTTCCGGTGGCCGTATTATTACGATACCTGAAGCCGACGAGAACGCCGAAGAAGACGAAGACGATGTTGAAGAATTCCAAGGATTCTTCGCCAATCCAAAAGCTTCTTCGTCGCTGAAATCTTACTCCGATGATTTGcaaatagaagaaaaagattGCAGAAACGTTCAGGTGAAGTTGATGCCCGAGTGTGCCATAGTCTCAGTATCTCGAACTCACGAGACTTACGCTTTGGTTCTTAGAGTGAAGGCTCCTTCGCCGCCACCTATTTCCCGGAGCAGCAGTGCCAAAACGACGCCGCTTCTTGGTCCGTCGCAGCGAGCGCCCATAGATCTCGTGACGGTTCTTGACGTAGGTGGAAGCATGACTGGTGCCAAGCTGCACATGCTAAAGCGCGCAATGCGTTTGGTTATTTCCTCTCTCGGCTCAGCCGATAGGCTCTCCATAGTGGCTTTCTCGGCTACTCCCAAGCGGCTTTTACCATTACGAAGAATGACAGCTCAAGGCCAGCATGTGGCTCGGCGCATCATTGACCGGCTCGTTTCTGGCCAAGGCACTTGCGTGGGAGACGCACTGAGGAAAGCCACCAAAGTGCTTGAGGACCGGAGAGAGAGGAACCCGGTGGCCAGTGTCATGCTCTTATCCGACGGTCAAGATGAGAGAGTCCAAACTAGTAACAACATCAATCAACGAAAATCCTCAAGCCACGTGTCCTCGACCCGGTTCTCCCACATCGAGATTCCGGTTCATGCCTTTGGTTTTGGAAAAAAGAGCGGCTTCACCCAGGAGCCAGCGGCTGAAGATGCATTTACAAAATGCGTTGGTGGCTTATTGAGTGTGGTGGTACAAGACTTGAGAATCCAGCTCGGCTTCCAGCCCAGCTCCTCGCCGGCTGAAATCAGCGCCATCTACTTGTGCAGTGGACGAGGACGGCCCACTGCGCTGACCTCAGGCTCCGTACGAATCGGCGATTTATACGCCGAGGAAGAGAGGGAATTACTCGTGGAGCTGAGAGTTCCCACGTCGGCTCTAGGGACCCACCACGTGATGACGGTACGGTGCCTGTATAAGGACCCTGCGACTCAAGAAATCGTATCTGGTAGCGAGCAGGCCCTACTGGTACCGCCGCCTCAGTGTAGTACCCGAAACGATCGGTTGAGGAATCTGTTCATAACGACTCGAGCCATTGCCGAATCTCGTAGGCTCATCGAGCACAGCAACGACTTCACGAGCGCTCATCATCTGCTGGCTTCGGCTCGAGCGCTTCTGATGCAGGCTAAGTCGACTTCGGCTGAGGAGTATGTGCGTGGGTTGGAAGCTGAGCTGGCGGAGCTGCATTGGCGGAAACAGAGTCCGATGGAGCAgcagatgatggtgatgatgcaGCAACGGAGGAGAGGAAACGAGAGGGAGATTGTGAACATGGTGGATGAAAATGGCGAGCCGCTCACGCCGACCTCGGCTTGGAGAGCGGCTGAGAAGCTGGCTAAAGTGGCTATCATGAAGAAGTCAATGAATAGAGTCAGCGATTTGCACGGCTTCGAAAACGCTAGGTTTTAA 2220 0.5212 MGTGWRRAFCSRDPESTISNNKHNRSTSPSHSPSPRSCVRLGFLSGGSNPTTPRLRCRTVSEAAAQANDSPRLHSKSSTPRATKSPKTTSLSNPTSPRSPLKLSLFKNSFKFRSSCGICLSSVKTGQGTAIYTAECGHAFHFPCIAAHVRKHGSLVCPVCSATWKDVPLLAVHKNLASDSAESNVVVDNTTQVEPSQQQPPKQQSESYRSYNDDEPLLSPTSGGRIITIPEADENAEEDEDDVEEFQGFFANPKASSSLKSYSDDLQIEEKDCRNVQVKLMPECAIVSVSRTHETYALVLRVKAPSPPPISRSSSAKTTPLLGPSQRAPIDLVTVLDVGGSMTGAKLHMLKRAMRLVISSLGSADRLSIVAFSATPKRLLPLRRMTAQGQHVARRIIDRLVSGQGTCVGDALRKATKVLEDRRERNPVASVMLLSDGQDERVQTSNNINQRKSSSHVSSTRFSHIEIPVHAFGFGKKSGFTQEPAAEDAFTKCVGGLLSVVVQDLRIQLGFQPSSSPAEISAIYLCSGRGRPTALTSGSVRIGDLYAEEERELLVELRVPTSALGTHHVMTVRCLYKDPATQEIVSGSEQALLVPPPQCSTRNDRLRNLFITTRAIAESRRLIEHSNDFTSAHHLLASARALLMQAKSTSAEEYVRGLEAELAELHWRKQSPMEQQMMVMMQQRRRGNEREIVNMVDENGEPLTPTSAWRAAEKLAKVAIMKKSMNRVSDLHGFENARF 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0618 739 CDD RING-H2 116 161 - -
Sto5g0618 739 SUPERFAMILY RING/U-box 115 166 - -
Sto5g0618 739 MobiDBLite consensus disorder prediction 189 217 - -
Sto5g0618 739 Pfam RING-like zinc finger 116 145 IPR001841 -
Sto5g0618 739 SMART ring_2 116 160 IPR001841 -
Sto5g0618 739 SMART VWA_4 329 517 IPR002035 -
Sto5g0618 739 CDD vWA_C3HC4_type 330 502 - -
Sto5g0618 739 MobiDBLite consensus disorder prediction 13 35 - -
Sto5g0618 739 SUPERFAMILY vWA-like 329 479 IPR036465 -
Sto5g0618 739 Pfam von Willebrand factor type A domain 332 438 IPR002035 -
Sto5g0618 739 PANTHER E3 UBIQUITIN-PROTEIN LIGASE WAV3 3 739 - -
Sto5g0618 739 MobiDBLite consensus disorder prediction 189 226 - -
Sto5g0618 739 ProSiteProfiles VWFA domain profile. 331 475 IPR002035 -
Sto5g0618 739 MobiDBLite consensus disorder prediction 1 100 - -
Sto5g0618 739 Gene3D von Willebrand factor, type A domain 331 494 IPR036465 -
Sto5g0618 739 MobiDBLite consensus disorder prediction 63 100 - -
Sto5g0618 739 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 215 IPR013083 -
Sto5g0618 739 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 739 - -
Sto5g0618 739 ProSiteProfiles Zinc finger RING-type profile. 116 161 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0618 Sto-Chr5 4086069 4088435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0618 108 248 C3H Transcription Factor Family AT3G03550 28.488 2.65e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0618 - - gmx:100811495 1028.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0618 5 4086069 4088435 Sto5g0618 5 4086069 4088435 ECH