Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0614 aTGGAGATGTATGGTCATCAGCACGATTTCATGGAGGAATTATTAGGTGTAAGAAGAGAAACATGGGACACTACCATGCCAAGTCCATCACAAGAAAACCAGTTCTTCTTCTCtaatactactactactactacttttGACTGTTTCGATCCGGACTCTCTTACTTTTCTCCCAAACACTTTCTCTCAAGAACAACTTCCTCATCATCAATCTTGCAACAACTATAGCAGTGCCTTCAACGAAATCTACAGCTCATTACTTGATGAATTCTCTGCACCCCACACCACTACCATTGATTCATCTGCGTCCTACTCCACCCTTGATCATTCCCCTCCTTTTCTGGGCCAAGAAGATATTGTTTACCCCTCCTTGTCGTCTATGATGGAAGATCACGAGGGTTTGTTTGGGGAAGAGTTTCAGAGTTTGAACCTCATCAAAACGACATGTAAGATAGAGCCTATCAGTATCAGCCATTCCCCTGATGAAACGCAGCGTTTCAACTTGGGCACCTCTTCGGAAATTAGATCAAAGAATCGACCTAATAATAAGAGGGTGCAGGGGCAGCCTTCCAAGAATCTAATGGcggagaggagaagaagaaaaagactaAACGACCGCCTCTCCATGCTAAGATCAATTGTCCCTAAGATTAGCAAgATGGACAGAACATCTATTCTTGGAGACACTATAGACTACATGAAAGAACTTCTGGAGAAGATTAAGAGCTTACAGCAACAAATGGAGTTTGATGTGGAGAGGAGGAATGTGGACACAAAGGTGGAAATATTCTGTACAGGGAAGCCAGGCTTGTTGCTATCTACAGTGAACACTCTGGAAGCCTTAGGTCTTGAGATTCAGCAATGTGTTATAAGTTGTTTCAATGATTTTACAGAATTGGAGCAGAGGACAATACTGAGTTCAGAAGATATAAAGCAAGCCTTGTTTAGAAATGCAGGCTATGGAGGAAGATGTTTGTGA 978 0.4029 MEMYGHQHDFMEELLGVRRETWDTTMPSPSQENQFFFSNTTTTTTFDCFDPDSLTFLPNTFSQEQLPHHQSCNNYSSAFNEIYSSLLDEFSAPHTTTIDSSASYSTLDHSPPFLGQEDIVYPSLSSMMEDHEGLFGEEFQSLNLIKTTCKIEPISISHSPDETQRFNLGTSSEIRSKNRPNNKRVQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLEKIKSLQQQMEFDVERRNVDTKVEIFCTGKPGLLLSTVNTLEALGLEIQQCVISCFNDFTELEQRTILSSEDIKQALFRNAGYGGRCL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0614 325 CDD ACT_UUR-ACR-like 258 298 - -
Sto5g0614 325 MobiDBLite consensus disorder prediction 171 190 - -
Sto5g0614 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 191 249 IPR036638 GO:0046983
Sto5g0614 325 MobiDBLite consensus disorder prediction 171 189 - -
Sto5g0614 325 Gene3D - 177 254 IPR036638 GO:0046983
Sto5g0614 325 SMART finulus 193 242 IPR011598 GO:0046983
Sto5g0614 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 187 236 IPR011598 GO:0046983
Sto5g0614 325 Coils Coil 233 253 - -
Sto5g0614 325 PANTHER DNA BINDING PROTEIN 6 325 - -
Sto5g0614 325 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 6 325 - -
Sto5g0614 325 Pfam Helix-loop-helix DNA-binding domain 193 236 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0614 Sto-Chr5 4055123 4056532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0614 157 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 55.446 2.50e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto5g0614 HLH 6.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0614 - - gmx:100814388 347.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0614 5 4055123 4056532 Sto5g0614 5 4055123 4056532 ECH