Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0607 ATGGGAAGAGGGAAGATCGTGATAAGGAGGATCGATAATTCGACGAGCAGACAAGTAACGTTCTCGAAGCGAAGGAACGGTTTGCTGAAGAAGGCGAAGGAGCTGGCGATCCTGTGCGATGCTGAGGTAGGAGTTATGATCTTCTCAAGCACTGGCAAGCTCTACGATTTCGCCAGCACAAGAATGCTATCAGATTACAAATAG 204 0.4804 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFASTRMLSDYK 67
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0607 67 SUPERFAMILY SRF-like 2 63 IPR036879 GO:0003677|GO:0046983
Sto5g0607 67 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sto5g0607 67 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sto5g0607 67 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto5g0607 67 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto5g0607 67 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto5g0607 67 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 66 - -
Sto5g0607 67 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sto5g0607 67 CDD MADS_MEF2_like 2 62 IPR033896 GO:0000977|GO:0045944
Sto5g0607 67 Gene3D - 13 66 IPR036879 GO:0003677|GO:0046983
Sto5g0607 67 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sto5g0607 67 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL16 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0607 Sto-Chr5 3985171 3985863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0607 1 64 MADS-box Gene Family AT4G37940 85.938 5.45e-32 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto5g0607 SRF-TF 7.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0607 K09264 - tcc:18591843 120.553