Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0594 ATGCTGTCTTCTCCTAAGCTGTCTTTCACCTTCACTGAGCCagctttctctttctctatatCTAGTTCCCTTCACACTCAAAACTCCGATACCAGCGCTGAACTCGCCTTCACACTTACACTCTTCTCAGgcgtaataataatatattataatttttctcagtTACCTCTCATTGTCTCTGATCAAACTCttattagggttagggtttcaagCGTTGGTCGTATCTTCTGTAATGCACCGGAAACCCCTAATTCAATCCTTAGAACAATGTACGGACACACCCCTACTATGAACATAGCCGCGCAGATCGCCGCCGGTGAAGATGACGGTGGCTCTGGCGCCCGCGCGGAGTCCATTGAAAACCACCACATTCATTACGAAACCCCCGCTCTCGAAGATGGTGGTGGAGGAGTTGGTGGAGTCATGGAGGATATTACCTCCGATACTCTCTATGTCTCTGGTAGCGGAGATGCTGAAATGTCTGTGCAACGCACTGATGATTCCAGCCAACTTACGCTCTCGTTTCGTGGCCAAGTATATGTGTTCGACGATGTTACTCCTGATAAGGTTCAAGCTGTATTATTACTTTTGGGTGGATGTGAAGTATCGTCAGGTTCGCAATGCCTGGAGGCAGCGCCTCAGAATCAGAGGGGTGCAATGGAATATCCTGGAAGATGTAGTCAGCCACAGCGGGCAGTCTCATTACGTAGGTTTCGtcagaagaggaaggagagatGCTTTGATAAGAAAGTTAGATATAGTGTACGCCAAGAAGTTGCCCTAAGTATGGCACATGACATAATGAACAAGAACCTAGCAGCTTGCTTTCGTGTCTTCCCTGCCCCTCCTCCCCCCAGGATGCACCGGAATAAGGGTCAATTTACTTCTTCTAAGAAACAAGATGGATCTAATAGTTGGGGTACAGTCCAGGAGTCAGGACAAGATGACAATCAATCAGAAACCTCATGTACGCATTGTGGCATAAGTTCAAAATCCACCCCAATGATGCGGCGAGGGCCATCTGGTCCAAGGTCACTTTGTAATGCTTGTGGGCTCTTTTGGGCAAATAGGGGTGCTTTGAGGGACCTTTCCAAGAGGAACCACGAACATTCTCTTGCCCCTGCGGAGCAGGTTGATGAAGGTAATGAATCAGACAGTCCAACTACCATACCAACGCATAACAATCTTGTTACTTTCTCTGATAATGATAACCCAGCCTTGATATCTGATCGTTGA 1236 0.4442 MLSSPKLSFTFTEPAFSFSISSSLHTQNSDTSAELAFTLTLFSGVIIIYYNFSQLPLIVSDQTLIRVRVSSVGRIFCNAPETPNSILRTMYGHTPTMNIAAQIAAGEDDGGSGARAESIENHHIHYETPALEDGGGGVGGVMEDITSDTLYVSGSGDAEMSVQRTDDSSQLTLSFRGQVYVFDDVTPDKVQAVLLLLGGCEVSSGSQCLEAAPQNQRGAMEYPGRCSQPQRAVSLRRFRQKRKERCFDKKVRYSVRQEVALSMAHDIMNKNLAACFRVFPAPPPPRMHRNKGQFTSSKKQDGSNSWGTVQESGQDDNQSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANRGALRDLSKRNHEHSLAPAEQVDEGNESDSPTTIPTHNNLVTFSDNDNPALISDR 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0594 411 MobiDBLite consensus disorder prediction 381 411 - -
Sto5g0594 411 MobiDBLite consensus disorder prediction 296 336 - -
Sto5g0594 411 ProSitePatterns GATA-type zinc finger domain. 323 350 IPR000679 GO:0006355|GO:0043565
Sto5g0594 411 ProSiteProfiles Tify domain profile. 164 199 IPR010399 -
Sto5g0594 411 PANTHER GATA TRANSCRIPTION FACTOR 28 98 264 IPR045280 GO:0006355
Sto5g0594 411 PANTHER GATA TRANSCRIPTION FACTOR 28 286 385 IPR045280 GO:0006355
Sto5g0594 411 SMART tify_2 164 199 IPR010399 -
Sto5g0594 411 MobiDBLite consensus disorder prediction 370 411 - -
Sto5g0594 411 Pfam CCT motif 231 263 IPR010402 GO:0005515
Sto5g0594 411 SMART GATA_3 317 370 IPR000679 GO:0006355|GO:0043565
Sto5g0594 411 Pfam GATA zinc finger 323 358 IPR000679 GO:0006355|GO:0043565
Sto5g0594 411 Gene3D - 313 372 IPR013088 GO:0006355|GO:0008270
Sto5g0594 411 MobiDBLite consensus disorder prediction 283 341 - -
Sto5g0594 411 CDD ZnF_GATA 322 367 IPR000679 GO:0006355|GO:0043565
Sto5g0594 411 Pfam tify domain 168 198 IPR010399 -
Sto5g0594 411 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 319 370 - -
Sto5g0594 411 PANTHER GATA TRANSCRIPTION FACTOR 25 98 264 - -
Sto5g0594 411 PANTHER GATA TRANSCRIPTION FACTOR 25 286 385 - -
Sto5g0594 411 ProSiteProfiles GATA-type zinc finger domain profile. 317 376 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0594 Sto-Chr5 3877167 3882323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0594 102 410 Tify Gene Family AT4G24470 46.809 7.38e-82 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sto5g0594 GATA 1e-13 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0594 - - pvu:PHAVU_008G182900g 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0594 5 3877167 3882323 Sto5g0594 5 3877167 3882323 ECH