Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0570 ATGGGTGGTGCATCTTCTTTCACcagatttttctttcctttcctcttcctcttcctccagGCCATTATTCTCCTTGCAGAAGCCGTTGGAGAGAGCCCAACTTTGACTCTCGATGACACCATTGACGCCGGAGATAACTCTCCCCCGTCGGCGCCCATTGCCGGCGGGAAAGGGGGTCCGTTCAAGCCCAGCGTGGTGGTTATAGTTGGGGTATTGGCCACCTTGTTCTCGCtcaccttccttcttcttctctatgtCAAACACTGTAAGCCCGAGGATGAGTCCTCCAGGAATTCAACCAGAGGCCCTGTTTTCATCGGCAGGAAGAACTCCGGGATTGATCGTACGGTCATCGAGTCCCTACCCATTTTCAGATTCGCATCTCTCCGAGGACAGAAGGATGGCCTCGAATGCGCGGTTTGCCTCAACCCCTTCGAGCCCGTTGAGATTCTCCGCTTGCTTCCAAAATGCAAGCACGCCTTTCACGTCGAATGCGTCGATACGTGGCTCGACGCACATTCCACGTGTCCCCTCTGTCGGTACCGGGTCGACCCGGAAGACATTCTTCTCGTGGAGGACGCTAAGGTTTGGCCGCAGAACCAACCTATTCCAGAATGCGGCCCTGCCAAGCCGGACCTAGAATCGGACATTGAAAGCGGACCGGACCCGGATCCGCAGAAGAACTCGGTTCTCCGGCGAGTCTCCGGGAGGCATTCCACGGAGGGTGAAACGACGCCGTCGACACAGCAGAAGAAAACGGCGATGCCGTTTAGAAGGTCACTGGACAGTGCAATGTGGCCGACGAAGAAAAAACGAAACGAAGGGAGTAGCAGTAGTAATGGCGGATGCGGTGATGGTCCCAGAAAAGATGGATTATTATTATCGACGGAAAAGGAAAACAAGCACCGATTGGAGCACAGGATCATAGTGTCTCCGTCACAAAAGCCCAAACCGCTTAATCTCCATCAAAGATGGAGCGACGTACAACCGTCGGATCTACTCTATCTGACGTCTGAGATGCTACTGAGCGAGGACAGCCGTAGATTGTCTTCTTCCTCATGTGGACCGGAGATGATGACAACAAACTTGAGAAGCGTGTCGGAAATCACGGGATTGAGCAGGGAAGAAGCGAGATGTACGGTAGGGATGCATTTAGTGCAGCCATTCAATTCTCGTCTCGTCTCCATGATACGGAGAATGCGGTTTCTGACACACACAAAAGGTACCGTTGCTGCCATGGATTCTATCTACTACTATCTAGTCTTTAGCTCTAGCCTCTAG 1281 0.5051 MGGASSFTRFFFPFLFLFLQAIILLAEAVGESPTLTLDDTIDAGDNSPPSAPIAGGKGGPFKPSVVVIVGVLATLFSLTFLLLLYVKHCKPEDESSRNSTRGPVFIGRKNSGIDRTVIESLPIFRFASLRGQKDGLECAVCLNPFEPVEILRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVEDAKVWPQNQPIPECGPAKPDLESDIESGPDPDPQKNSVLRRVSGRHSTEGETTPSTQQKKTAMPFRRSLDSAMWPTKKKRNEGSSSSNGGCGDGPRKDGLLLSTEKENKHRLEHRIIVSPSQKPKPLNLHQRWSDVQPSDLLYLTSEMLLSEDSRRLSSSSCGPEMMTTNLRSVSEITGLSREEARCTVGMHLVQPFNSRLVSMIRRMRFLTHTKGTVAAMDSIYYYLVFSSSL 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0570 426 CDD RING-H2_EL5_like 137 180 - -
Sto5g0570 426 SUPERFAMILY RING/U-box 116 185 - -
Sto5g0570 426 PANTHER RING-H2 FINGER PROTEIN ATL43 45 377 - -
Sto5g0570 426 Pfam Ring finger domain 137 180 IPR001841 -
Sto5g0570 426 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Sto5g0570 426 MobiDBLite consensus disorder prediction 240 256 - -
Sto5g0570 426 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 45 377 - -
Sto5g0570 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 187 IPR013083 -
Sto5g0570 426 MobiDBLite consensus disorder prediction 200 292 - -
Sto5g0570 426 SMART ring_2 138 179 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0570 Sto-Chr5 3649740 3651247 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0570 63 374 C3H Transcription Factor Family AT5G05810 48.837 3.89e-85 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0570 K19041 - jre:109009455 313.923