Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0569 ATGCTTCCTTTTAGGAGTTTCTATGGGTTTGAGAGCTGGTTAGATCATAGTGGGTATTCTCAATCTCAGGGACCCGCCTCCTTCATCAAGTCCATGGAATTGGACGGTGGAAAATCGATCAAGCCTGAGAGGAAATCAACGGAAGCATGCAAGAGCCACAGGGAAGCTGAGAGGAGACGCAGGCAGCGAATCAACGCCCACCTTTCCACTCTCCGCTCTCTCCTCCCTAACACCGCCAAGTCGGATAAGGCCTCGTTGCTAGCCGAGGTGGTCCAACGTGTGAAAGACCTTAGGAAACAGGCCCATGACGTGGCGCCACATCACGACGGAGACTTGTCGTGcagcaccaccaccaccgccgaaGCCACGTCGGATCCCGCAGATACGGAGCTTTGGCCCTTCCCCGGCGAGTCCGACGAGGCCACTCTCAGTTATTGCGACGCTTCTGGGGACTCCAACTCCAAGCTATTGAAAGCAACGCTGTGCTGCGAGGACCGGCCCAACCTGAACCGGGATCTAGCGCAGGCGATTCGGTCGGCTCGAGCTAAGGCGGTACGGGCCGAGATCATGACGGTTGGTGGGCGAACCAAGAGTGTGGTGATGATGCAAATGCAATGTCCTGGTCCAGGTGGGAAAGAGGAGGAGGTGGAGATTCGAGCACTGGAACGGGCTTTAATGGCTGTTGTAGAGAATCGGGCTTTGGTGGGTTCTGGTCTGGGCCGAATGGGGTCCAAAACCTGTTCGCTTGTCCGTTCAACGCTTGCTCTTGTGGGTCCGTCTTTCCATGGAGATCATACCTCACGCTGCTCACCCTTCGTGCCTCGCTCCAAGTTTGCCAAATGGGCAAAAACTGAAGCAGTATCGCCGTTTTCTGTCAAGGAGAAACAACTAGAGATTCCGAGTCAAGAGTACAACTACAGAGGCCCTAACATGGATCAAACTGATGGCAGCAACGACTTATTTGGTATAATGAAACAGAGGTTTCTGAGTTTCAAGAACCAGAAATATATGGAAGAGTTGGAGCATTTTCAAGCTCTTGCTGAAGCTCAATCTCCAAAGTTTATGGTCATTGCTTGTGCAGACTCTAGGGTATGCCCCTCTAATGTACTAGGATTTCAACCCGGAGAGGCCTTCATGATACGTAACATCGCCAATCTTGTCCCTCCAATGAAGAATGGGCCAACTGAGTGTAATGCTGCTCTTGAGTTTGCTGTAACTATTCTCAAGGTTGAGAATATTTTAGTTATTGGTCATAGTAGCTGTGCTGGAATTGAAACGTTGATGAATATACAAGAAGATGCAGAATCAAGCTTCATCAACAAATGGGTTATAAATGGGACAGTTTCCAAGTTGAAGACAAAAGCTGCCACTGCTAATCTTAGCTTTGGTGAGCAATGCAAATTCTGTGAGAAGGAGTCCATAAACCAATCATTGATGAACTTGCTCAGTTACCCTTGGATACAAGATAAAGTGAGAAATGAATTACTTTTTCTTCATGGCGGATACTATGATTTCTCAAATTGCTCGTTTGAGAAATGGACCCTTGATTTCAAAGCATGCGATGTTAAAGAAGGAGGCAACTACTATAGAGTCAAAGAACAAGATTTCTGGTGCTGA 1617 0.4762 MLPFRSFYGFESWLDHSGYSQSQGPASFIKSMELDGGKSIKPERKSTEACKSHREAERRRRQRINAHLSTLRSLLPNTAKSDKASLLAEVVQRVKDLRKQAHDVAPHHDGDLSCSTTTTAEATSDPADTELWPFPGESDEATLSYCDASGDSNSKLLKATLCCEDRPNLNRDLAQAIRSARAKAVRAEIMTVGGRTKSVVMMQMQCPGPGGKEEEVEIRALERALMAVVENRALVGSGLGRMGSKTCSLVRSTLALVGPSFHGDHTSRCSPFVPRSKFAKWAKTEAVSPFSVKEKQLEIPSQEYNYRGPNMDQTDGSNDLFGIMKQRFLSFKNQKYMEELEHFQALAEAQSPKFMVIACADSRVCPSNVLGFQPGEAFMIRNIANLVPPMKNGPTECNAALEFAVTILKVENILVIGHSSCAGIETLMNIQEDAESSFINKWVINGTVSKLKTKAATANLSFGEQCKFCEKESINQSLMNLLSYPWIQDKVRNELLFLHGGYYDFSNCSFEKWTLDFKACDVKEGGNYYRVKEQDFWC 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0569 538 Pfam Carbonic anhydrase 355 507 IPR001765 GO:0004089|GO:0008270
Sto5g0569 538 Gene3D - 43 109 IPR036638 GO:0046983
Sto5g0569 538 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 51 103 IPR036638 GO:0046983
Sto5g0569 538 SUPERFAMILY beta-carbonic anhydrase, cab 317 519 IPR036874 GO:0004089|GO:0008270
Sto5g0569 538 Pfam Helix-loop-helix DNA-binding domain 50 97 IPR011598 GO:0046983
Sto5g0569 538 MobiDBLite consensus disorder prediction 37 59 - -
Sto5g0569 538 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 1. 359 366 IPR015892 GO:0004089|GO:0008270|GO:0015976
Sto5g0569 538 MobiDBLite consensus disorder prediction 111 125 - -
Sto5g0569 538 PANTHER CARBONIC ANHYDRASE 276 538 - -
Sto5g0569 538 Gene3D Carbonic anhydrase 313 523 IPR036874 GO:0004089|GO:0008270
Sto5g0569 538 PANTHER CARBONIC ANHYDRASE 276 538 IPR001765 GO:0004089|GO:0008270
Sto5g0569 538 MobiDBLite consensus disorder prediction 102 128 - -
Sto5g0569 538 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Sto5g0569 538 CDD ACT_UUR-ACR-like 160 228 - -
Sto5g0569 538 CDD beta_CA_cladeB 327 513 IPR045066 GO:0004089|GO:0008270
Sto5g0569 538 SMART Pro_CA_2 347 514 IPR001765 GO:0004089|GO:0008270
Sto5g0569 538 SMART finulus 54 103 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0569 Sto-Chr5 3638589 3641859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0569 45 230 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 42.781 6.02e-29 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto5g0569 Pro_CA 4.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0569 K01673 - gmx:100812124 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0569 5 3638589 3641859 Sto5g0569 5 3638589 3641859 ECH