Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0555 ATGGCACCCAGCTTTGATTGCGTTTCAAGTCTGCTTTGTGCAGAAGACAACATCGTTTTCGATGATAACGATTACGCGGGTTCCATGGGGATGGGGCTGTTGGATGATACATGGCATCACACTCACACATACCATGGACTccataatccaattccaagcCGCGATGACGCCGATGGGTTGCCTTTGCAGAGTGATGAGGGTTTGGCGTTAATGGTGCAGAAGGAATACCAGCATATACCTGCTGGCGATTACTTGAATAGGCTACGCACTGGGGATTTGGACTCTGGGGCCAGGAAGGAGGCCATTGATTGGATTGAAAAGGTTCGACTGCATTTCCGTTTTGGGCCTCTCTGTGCATATCTATCCATAAACTACTTGGATCGCTTCCTTTCTGCATATGAATTACCAAAGGGAAAAGCTTGGTCTATGCAATTGTTAGCTGTGGCATGCTTATCTCTCGCAGCCAAACTGGAGGAGACTGAAGTTCCTATGTGTATTGATTTGCAGGTGGGTGAATCAAAGTTTATATTTGAAGCCAGAACTATACAGAGGATGGAGCTTCTAATACTTAGCACACTTAGGTGGAGAATGCAAGCAATTACCCCTTTCTCCTTCATAGACTATTTCCTTTGCAAGATCAATGAAGATCAAAGTCAACTAagaacttcaatttcacaatccACCCAACTGATATTGAGTGCTATAAGAGGGATAGACTCATTGGAATTCAGGCCATCAGAAATAGCAGCAGCTGTGGCACTATGTGTTGTTGGGGAAACCCAAACAGTTAACACAGAGAAAGCAATGTCAATTCTGATTCAACATGTAGAAAAGGAGAGAGTCTTGAAGTGCATTAAAATTGTGCAAGAGTTGTCATCAAACAGCAGCAGCATCAGCACCTCTTCCAGTGCTTCTTCTGTGCCCCAAAGCCCAATAGGGGTGTTAGATGCGGCATGCTTGAGCTATAAAAGTGATGACATAAATGATGCTTCATGTGCTAATTCTTCACATAATAATAGCCCAGATGCTAAAAGGAGGAAGCTAAACAAAACCTGTGGATTAGAACTATAA 1071 0.4211 MAPSFDCVSSLLCAEDNIVFDDNDYAGSMGMGLLDDTWHHTHTYHGLHNPIPSRDDADGLPLQSDEGLALMVQKEYQHIPAGDYLNRLRTGDLDSGARKEAIDWIEKVRLHFRFGPLCAYLSINYLDRFLSAYELPKGKAWSMQLLAVACLSLAAKLEETEVPMCIDLQVGESKFIFEARTIQRMELLILSTLRWRMQAITPFSFIDYFLCKINEDQSQLRTSISQSTQLILSAIRGIDSLEFRPSEIAAAVALCVVGETQTVNTEKAMSILIQHVEKERVLKCIKIVQELSSNSSSISTSSSASSVPQSPIGVLDAACLSYKSDDINDASCANSSHNNSPDAKRRKLNKTCGLEL 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0555 356 ProSitePatterns Cyclins signature. 98 129 IPR006671 -
Sto5g0555 356 SMART cyclin_7 103 191 IPR013763 -
Sto5g0555 356 Pfam Cyclin, N-terminal domain 70 197 IPR006671 -
Sto5g0555 356 Pfam Cyclin, C-terminal domain 200 302 IPR004367 -
Sto5g0555 356 SUPERFAMILY Cyclin-like 61 197 IPR036915 -
Sto5g0555 356 PANTHER CYCLINS 1 349 IPR039361 -
Sto5g0555 356 CDD CYCLIN 98 190 IPR013763 -
Sto5g0555 356 Gene3D - 81 198 - -
Sto5g0555 356 MobiDBLite consensus disorder prediction 332 356 - -
Sto5g0555 356 Gene3D - 70 286 - -
Sto5g0555 356 SMART Cyclin_C_2 200 323 IPR004367 -
Sto5g0555 356 MobiDBLite consensus disorder prediction 340 356 - -
Sto5g0555 356 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 1 349 - -
Sto5g0555 356 SUPERFAMILY Cyclin-like 182 291 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0555 Sto-Chr5 3537992 3539919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0555 71 333 Core Cell Cycle Gene Families AT2G22490 50.000 3.90e-85 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0555 K18810 - gmx:100803873 486.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0555 5 3537992 3539919 Sto5g0555 5 3537992 3539919 ECH