Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0550 ATGGGCTACCTCTCTTGCAATGCCGAATCTGCCATCGCCACCTGTGATTCCCACTATTGGGATCTCAAGAAGAACCGAACAACGCCTAAAACCCACAGGAACTTTCACTACTCTGACCTTCTTTCCGCCACCAATGGCTTCTCCGCAGATTGCTTCTTAGGCAAAGGCAGCCATGGCAGTGTCTACAGAGCCACCCTCGACGGCGGAAACCTCATCGCCGCCGTCAAAATAACTAACTTCTCCAAACCTTCCGCCACCAGCCAAACGGAGAACGAGATCGAGATTCTCTCCAGAGTCCGAAATCCTCGCCGTTTCGTCAACCTCATTGGCTACTGCTCCCACAACCACTACCACTTGATTGTCGTTGACTACATGCCCAACGGTTCGCTCTACGATGCCTTACACTCCACCACCACACCGCCCGGTTGGAGCCGCCGTCTCCGGTTCGCCTCGCAGGTGGCAAAAGCGGTTCACTCTCTCCACTCTTCCAACCCCCCCGTGATTCACCGCGACATCAAGTCATCCAACGTGTTGATCGACGAGAAAGGGAGAGCCAGACTGGGTGATTTCGGTTTGGCACTCAGGGGACACGTGGAGGACGTTCGCGTGAAGTGCACGCCACCCGCGGGCACGTTGGGATATCTGGACCCCTGCTATCTTGCGCCGGGGGATCTAAGCGCCAAGAGCGACGTCTTCAGCTTCGGCATCTTGTTGCTGGAGATCATCAGTGGAAGGAAAGCCATCGATTTGAATTACAGCCCGCCCTCCGTGGTGGACTGGGCCGTGCCCTTGATCAAGCGCGGGGAAATTGCGAGTATATGTGACCGGAGGATTGGGAGGCCGTCGGACAGGGCGGCGATATGGCAGCTGTCGGTGGTGGCGGCCAAGTGTGTGAGGTCGAGGGCGGAGAAGAGGCCGTCGATGGGGGAGAACAACAGATTAATGGATGAGTGGGACCCAAATCCGAATGTGAGGTTGAACAAGTCCAGGTCTTTGGGGGGTCTTCAAGGTCAACGCCTTAATGCATAG 1029 0.5627 MGYLSCNAESAIATCDSHYWDLKKNRTTPKTHRNFHYSDLLSATNGFSADCFLGKGSHGSVYRATLDGGNLIAAVKITNFSKPSATSQTENEIEILSRVRNPRRFVNLIGYCSHNHYHLIVVDYMPNGSLYDALHSTTTPPGWSRRLRFASQVAKAVHSLHSSNPPVIHRDIKSSNVLIDEKGRARLGDFGLALRGHVEDVRVKCTPPAGTLGYLDPCYLAPGDLSAKSDVFSFGILLLEIISGRKAIDLNYSPPSVVDWAVPLIKRGEIASICDRRIGRPSDRAAIWQLSVVAAKCVRSRAEKRPSMGENNRLMDEWDPNPNVRLNKSRSLGGLQGQRLNA 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0550 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Sto5g0550 342 Gene3D Phosphorylase Kinase; domain 1 9 124 - -
Sto5g0550 342 ProSitePatterns Protein kinases ATP-binding region signature. 53 76 IPR017441 GO:0005524
Sto5g0550 342 PANTHER OS01G0253100 PROTEIN 1 310 IPR045271 GO:0004714|GO:0006468
Sto5g0550 342 PANTHER TYROSINE KINASE FAMILY PROTEIN 1 310 - -
Sto5g0550 342 Pfam Protein tyrosine and serine/threonine kinase 52 310 IPR001245 GO:0004672|GO:0006468
Sto5g0550 342 SUPERFAMILY Protein kinase-like (PK-like) 31 313 IPR011009 -
Sto5g0550 342 ProSiteProfiles Protein kinase domain profile. 47 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto5g0550 342 Gene3D Transferase(Phosphotransferase) domain 1 125 329 - -
Sto5g0550 342 MobiDBLite consensus disorder prediction 304 342 - -
Sto5g0550 342 SMART serkin_6 47 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto5g0550 342 MobiDBLite consensus disorder prediction 324 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0550 Sto-Chr5 3492147 3493460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0550 21 308 Receptor kinase-like Gene Family AT3G59420 43.197 5.15e-68 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Sto5g0550 PK_Tyr_Ser-Thr 2.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0550 - - mnt:21408709 444.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0550 5 3492147 3493460 Sto9g3063 9 31472448 31475095 CCT
Sto5g0550 5 3492147 3493460 Sto5g0550 5 3492147 3493460 ECH