Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0547 ATGTGGCATGACTTGGTTGATAAGATAAGGCATTGGGAAAAGGCAGAGGGCACTGCTCCTTCTGCTCACATCACATGGAAGTGGGTGAGTGAAGAAGGAATTGAAGGAAAGAGCATTAGAAGTGATCTTCCCCCATCGGAAGCAGAAAGCAAATTCCAACTAAAACACAAACAGTTTGAAAGCAAattattaaaggaaaaaaaaaagacaaagaaaAAGGTGGAGGCAGACATGGAATTTGAGGAGCAGGAAGAGGAGGACATGGGGATGCCGGCGTCGCCTCCGGGTTATGACTCGCTCAACAACTCGGGGACGAGGTCCAAAATAGGTGTCTCCGTCGTCGGAAGCGAAGGAGGCGCGTCCACTGTGACAGCTGGCAGGAAAGTAGGGTCCACAGTAACGGCCAGGTACAGAGAATGCCAAAAGAACCACGCCGTGAGCCTAGGCGCCCACGCTCTCGACGGCTGTGGAGAGTTCATCGCGGCCGGAGAAGAAGGTACACTAGACGGGCTAAAATGCGCCGCCTGTAACTGTCACCGCAATTTCCACCGCAAGGAGACGGAGGGTGGAGAAATGATCTCGTACCATCCTCCGTACCACCATCAACAGTTCCCACCTTACTATCGCGCGCCGCCTCCGCTGCCGCCGCCCGCGGGCTACctccaccaccatcatcatctaGCGGCTCAGCCGATGGCGCAACAGCGGCCGTTGGCCCTACCGCCAGCGGCGTGGGGAGGAACGTCGAGTAGAGATGAGGAGGATATTTCGAATCCGAGCAGCAGCGGCGGAGGAGGAGACGGAGGAAGGAAGAAAAGGCATAGGACGAAGTTCACGCAGGAGCAGAAGGAGAAGATGCTGGCATTTGCGGAGCGGGTCGGGTGGAGGATCCAGAAGCATGACGAAGCTGCGGTGGAGGAATTCTGTGCGGAGACTGGTGTGAGGAGACACGTGCTCAAGGTTTGGATGCACAATAACAAGAACACTCTTGGTAAGAAACCCTAA 1005 0.5303 MWHDLVDKIRHWEKAEGTAPSAHITWKWVSEEGIEGKSIRSDLPPSEAESKFQLKHKQFESKLLKEKKKTKKKVEADMEFEEQEEEDMGMPASPPGYDSLNNSGTRSKIGVSVVGSEGGASTVTAGRKVGSTVTARYRECQKNHAVSLGAHALDGCGEFIAAGEEGTLDGLKCAACNCHRNFHRKETEGGEMISYHPPYHHQQFPPYYRAPPPLPPPAGYLHHHHHLAAQPMAQQRPLALPPAAWGGTSSRDEEDISNPSSSGGGGDGGRKKRHRTKFTQEQKEKMLAFAERVGWRIQKHDEAAVEEFCAETGVRRHVLKVWMHNNKNTLGKKP 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0547 334 Gene3D - 256 331 - -
Sto5g0547 334 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 128 333 - -
Sto5g0547 334 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 128 333 - -
Sto5g0547 334 SUPERFAMILY Homeodomain-like 257 332 IPR009057 -
Sto5g0547 334 MobiDBLite consensus disorder prediction 240 281 - -
Sto5g0547 334 Coils Coil 64 84 - -
Sto5g0547 334 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 271 328 IPR006455 -
Sto5g0547 334 Pfam ZF-HD protein dimerisation region 135 187 IPR006456 -
Sto5g0547 334 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 137 186 IPR006456 -
Sto5g0547 334 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 136 186 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0547 Sto-Chr5 3483633 3485467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0547 78 330 ZF-HD Transcription Factor Family AT4G24660 53.696 7.84e-74 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Sto5g0547 ZF-HD_dimer 7.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0547 - - pop:7467187 304.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0547 5 3483633 3485467 Sto9g3060 9 31457277 31466903 CCT
Sto5g0547 5 3483633 3485467 Sto5g0547 5 3483633 3485467 ECH