Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0539 atgaggaagaaaagaaaaggaagtgaGACAGATGCATCCTCAAATGTGCCTGAAATATTGAGTTCAAATCACTACTCGCTAGAAGATTGTTCCAGGTTGAAGAAGAGGTGTAAAGAAGATGCGGATGCAGAACCAGTTGCGTCCTCTTGTGGGATATCATCTTTGATCACACCTGGAAGAGGTCTCAAGAGGAAGATAGGATGCATTGATGTTGCTACTCAAATGGGCAGGAAGAAAAAGATTGAGGATGAGTATGTTTCTGGTGAAACAATTGGGCAAGGCAAATTTGGATCTGTTTGGTTGTGTCGGTCCAGGCTTAGTGGAGCAGAATATGCATGTAAGACTCTGAGGAAGGGAGAGGAAACAGTTCATCGGGAAGTCGAGATAATGCAACACTTATCTGGACATCCTGGTGTTGTGACACTGCTAGCAGTGTATGAAGAAGCCGAATGCTTTCATCTTGTTATGGAATTGTGCTCTGGGGGGCGACTGATCGATAGGATGGTTAAGGAGGGCCCATATACAGAACAGCGAGCTGCTAATGTACTAAAGGAAGTGATGTTAGTCATTAAGTATTGTCATGATATGGGAGTTGTTCACAGAGACATCAAACCTGAGAATATCCTGTTAACAACATCAGGAAAAATAAAGCTTGCAGATTTTGGCCTGGCCATGAGAATTTCTAATGGTCAGAACTTGACTGGTTTGGCTGGAAGCCCTGCATATGTTGCCCCAGAGGTATTGTCAGGTAGCTACTCTGAAAAGGTGGATATATGGAGTGCTGGAGTTCTCCTGCATGCTCTGTTAGTTGGCGTTCTTCCATTCCAAGGAAATTCATTGGAAGCAGTCTTTGAGGCTATTAAGAATGTCAAACTGGATTTCCAAAAAGGGATGTGGGACTTGATATCTAAGCCTGCTCGAGATCTTGTTGGGAGGATGCTGACAAGGGATGTTTCAGCGAGGATAACAGCTGATGAAGTACTTAGGCATCCATGGATATTGTTCTACACGGAACCAACATTAAAATGTCTTCCCGTCAAAACAAAATTGAAGCACCAAATTGGAGGCTCCTGCCGGCCGTTTGTTGCACCGGAAGCTGGGTCAGGGGGAAACAGGATAGACGATAGCTCCCTTAGTGAAGTTTCAAGCCCGCTTTCATCACCCCAGAGTTGCAATTCAGAAGATCAGGATGATTGTGTGTTGATTGATGTGCTTGCCTCTGCAATTTCACATGTGAGAATATCCGAACCAAAGAGGAGTAGGTTGTGTGGTCCAACAGGTCCTAGTATAGATCAGCAAGGTTCATCTAACATGAAGGCTAACAACCTCTGTAAAGCATTTTGA 1344 0.4345 MRKKRKGSETDASSNVPEILSSNHYSLEDCSRLKKRCKEDADAEPVASSCGISSLITPGRGLKRKIGCIDVATQMGRKKKIEDEYVSGETIGQGKFGSVWLCRSRLSGAEYACKTLRKGEETVHREVEIMQHLSGHPGVVTLLAVYEEAECFHLVMELCSGGRLIDRMVKEGPYTEQRAANVLKEVMLVIKYCHDMGVVHRDIKPENILLTTSGKIKLADFGLAMRISNGQNLTGLAGSPAYVAPEVLSGSYSEKVDIWSAGVLLHALLVGVLPFQGNSLEAVFEAIKNVKLDFQKGMWDLISKPARDLVGRMLTRDVSARITADEVLRHPWILFYTEPTLKCLPVKTKLKHQIGGSCRPFVAPEAGSGGNRIDDSSLSEVSSPLSSPQSCNSEDQDDCVLIDVLASAISHVRISEPKRSRLCGPTGPSIDQQGSSNMKANNLCKAF 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0539 447 PANTHER SERINE/THREONINE-PROTEIN KINASE 21 437 - -
Sto5g0539 447 Pfam Protein kinase domain 85 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto5g0539 447 SMART serkin_6 85 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto5g0539 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Sto5g0539 447 MobiDBLite consensus disorder prediction 372 394 - -
Sto5g0539 447 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524
Sto5g0539 447 ProSiteProfiles Protein kinase domain profile. 85 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto5g0539 447 CDD STKc_CAMK 85 332 - -
Sto5g0539 447 Gene3D Transferase(Phosphotransferase) domain 1 76 355 - -
Sto5g0539 447 PANTHER SERINE/THREONINE-PROTEIN KINASE PEPKR2 21 437 - -
Sto5g0539 447 MobiDBLite consensus disorder prediction 366 394 - -
Sto5g0539 447 SUPERFAMILY Protein kinase-like (PK-like) 76 358 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0539 Sto-Chr5 3436723 3439251 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0539 38 332 EF-hand Containing Proteins AT2G38910 41.176 5.85e-80 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Sto5g0539 Pkinase 1.4e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0539 - - gmx:100812729 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0539 5 3436723 3439251 Sto5g0539 5 3436723 3439251 ECH