Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0534 ATGATCACCCACAGGAACAGGTATCGTGCTCCAACCATTCTCACTCTCTCTAATATTTGTGACCATTATGGccttctcttctttcttcttctcctacCAGCCTCCGCACAGGTCCCAGCCACCCCTTCCCCCTCTGATCCCCCTCCTCCCCCTGACCAACTCGAACCAATCTACAAGGTCCGCTTTGATAAATCCATGACCACCATCTTCGTCATCCTCGTGGTCGTCTTCCTCGCCTTAGGCTTCATCTCTATCTACTCTCGTCAATGTGCAGAGCGACGGTTCCGACCAACTAACGGCCCATTTACCGGAAGCAACCGCCAACCACAACACGGCCTGGATTCCGACATCATCGACACCTTCCCCACCTTCATGTACTCCGCCGTGAAGCGCCTCAAAATTGGGAAGAGCTCGCTGGAATGCGCCGTGTGCTTGAACGAATTTCAAGAGCAGGAAACTCTGCGTTTCATCCCCAAATGCAGTCACGTCTTCCATACCCACTGTATCGACCTCTGGTTGTCCTCTCACTCCACCTGTCCCGTTTGTCGCGCTAACCTCTCTTCCCACGACGCATCCTCCTCCATCCAGATAGCGGACTCTGATATCCCATTCCCAACATCGCAATCTGAAGAAGAGAATGAGAGGGATACGATGATGATGAACTTAGTGAACGGGAATCAGAGGTCAAGGGGGTTTGGGTGGTTGCTTCCTCGTTCTCACTCGACGGGACACTCGGTGGTGTCCCCGAGGGAGAATCAGGAAAGGTTCACTCTGAGACTGCCACAGGAGGTGAGGACGGAGCTTCTGAATTCGACGCTCAAGCGTGCCAAAAGTTGTGTCACATTTAGGAGAATGAGCAGTGAGAGAAGGAGTTACAGAACCAGAAGCGCGGGCTTCACATGGACGCCGCCTTCTATTAGCAGGTCAAGGAAGCCCTGGAATGCGGATGCTTCAGAAACAGAGGAGTTGGACCAATACATAGGTGAACGATCCTCTGATTGCTTATGTCCACAACCACAACGCCTCCATTTATTAAACGCTACATCCCATCTATACCTTGCTTAA 1065 0.508 MITHRNRYRAPTILTLSNICDHYGLLFFLLLLPASAQVPATPSPSDPPPPPDQLEPIYKVRFDKSMTTIFVILVVVFLALGFISIYSRQCAERRFRPTNGPFTGSNRQPQHGLDSDIIDTFPTFMYSAVKRLKIGKSSLECAVCLNEFQEQETLRFIPKCSHVFHTHCIDLWLSSHSTCPVCRANLSSHDASSSIQIADSDIPFPTSQSEEENERDTMMMNLVNGNQRSRGFGWLLPRSHSTGHSVVSPRENQERFTLRLPQEVRTELLNSTLKRAKSCVTFRRMSSERRSYRTRSAGFTWTPPSISRSRKPWNADASETEELDQYIGERSSDCLCPQPQRLHLLNATSHLYLA 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0534 354 PANTHER RING-H2 FINGER PROTEIN ATL11 28 287 - -
Sto5g0534 354 SUPERFAMILY RING/U-box 136 188 - -
Sto5g0534 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 189 IPR013083 -
Sto5g0534 354 PANTHER RING FINGER DOMAIN-CONTAINING 28 287 - -
Sto5g0534 354 CDD RING-H2_EL5_like 140 183 - -
Sto5g0534 354 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Sto5g0534 354 Pfam Ring finger domain 140 183 IPR001841 -
Sto5g0534 354 SMART ring_2 141 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0534 Sto-Chr5 3399247 3400311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0534 26 310 Rapid Response to Elicitors AT3G05200 39.117 5.21e-57 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0534 K10664 - gmx:100805815 261.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0534 5 3399247 3400311 Sto9g2675 9 28877513 28878544 CCT
Sto5g0534 5 3399247 3400311 Sto5g0534 5 3399247 3400311 ECH