Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0532 ATGGCATTAGAGGCAGTAGTTTTCCCACAAGATCCATTCAGCTATAGCTTCAAGGATTTGTACTCGTTGTTAGGAGGAGGTTGGAGCGAGGAAGAAGCAAAATTAGAAGAGAAAGGCAtggttggaattggaattaaaaACAATAAGAGAGAGCATAGTACTACGACTAGTAGTGTGCATGCAAGTTGGGATTACTACTCTTGTTCATCTGCTACTTCCAATTCGGTGTTGCAAAATGTGAAAGAGCCTTGGGATTACAATTCTAATTCTTCTCCTGAGGCCTGCACCCTCTATCCCTCTGCCTCTGCTCCTTCCTCCACAGGCCGCCGCAAACGACGTCGCACCAAGAACGCCAAGAACAAGGAGGAAATCGAGAACCAGAGGATGACCCACATTGCCGTGGAGCGCAATCGCCGCAGACAGATGAATGACTACCTCGCTGTCCTCCGATCCTTGATGCCTCCTTCTTATGTCCAAAGGGCCTCTATAATTGGGGGCGCCATTAACTTCGTCAAAGAGCTCGAACAGCTTCTGCAGTCCATGGAGGCCCAAACTCAAAACAAATCCAATGAAACTGCCTTTGCTCACTTCTTCACTTTCCCACAGTATACCACCACAAGTGCAGCTCAGAGCTGTACGGCCACAAACGACGCTGTCCAGAAGGAGTCCGGAGTAGCCGACATAGAAGTGAGCTTGGTGGACAGCCACGCCAACCTCAAGATACTCTCCAACAAGCAACCAGGACAGCTTCTGAAGATGGTTCTTGGCCTTCAGACTCTCAGACTCTGCATTCTTCACCTCAATGTTACTACCACTTTGGATAATATGGTCCTTTACTCCCTCAGCGTAAagGTTGAGGAAGGGTGTCAGCTGAGCACAGTGGATGAAATCGCAGATGCTGTGAATCAACTGTTGCGCAGAATTCAGGAAGAAGCGTGTTTCAGCTGA 948 0.4757 MALEAVVFPQDPFSYSFKDLYSLLGGGWSEEEAKLEEKGMVGIGIKNNKREHSTTTSSVHASWDYYSCSSATSNSVLQNVKEPWDYNSNSSPEACTLYPSASAPSSTGRRKRRRTKNAKNKEEIENQRMTHIAVERNRRRQMNDYLAVLRSLMPPSYVQRASIIGGAINFVKELEQLLQSMEAQTQNKSNETAFAHFFTFPQYTTTSAAQSCTATNDAVQKESGVADIEVSLVDSHANLKILSNKQPGQLLKMVLGLQTLRLCILHLNVTTTLDNMVLYSLSVKVEEGCQLSTVDEIADAVNQLLRRIQEEACFS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0532 315 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 126 193 IPR036638 GO:0046983
Sto5g0532 315 MobiDBLite consensus disorder prediction 95 124 - -
Sto5g0532 315 Gene3D - 116 196 IPR036638 GO:0046983
Sto5g0532 315 Pfam Helix-loop-helix DNA-binding domain 127 174 IPR011598 GO:0046983
Sto5g0532 315 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 313 - -
Sto5g0532 315 Coils Coil 171 191 - -
Sto5g0532 315 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 174 IPR011598 GO:0046983
Sto5g0532 315 SMART finulus 132 180 IPR011598 GO:0046983
Sto5g0532 315 PANTHER MAX DIMERIZATION, MAD 1 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0532 Sto-Chr5 3387960 3389090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0532 1 285 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 46.474 2.68e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto5g0532 HLH 4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0532 - - gmx:100797856 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0532 5 3387960 3389090 Sto9g3053 9 31407795 31408983 CCT
Sto5g0532 5 3387960 3389090 Sto5g0532 5 3387960 3389090 ECH