Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sto5g0531 | ATGGCGAGGCTAAACAGAAAACTCTTCCCAACACTGTCCACTATAAACCAAACCCAAGATTGTCCTGATTTTTGCGACCCTGCCTGCCCTTACAATTGCTACTCCTTCCCAGACTACAACTTCCCTCCACCTCCTATTTATTCTTCTCATCACTCATCCCAACCTACACATATCTCCTCCATTTTCATCATCATTgcctctctcttctctttcattTTTGTTCTTGTTGCTTTCTACATCATCAAAACCAAGTTTTACGCTCATTGGTGTGGGAGGAGAGTGAGACGCAATGGATCTCCCTCAAACATAACTGACCAAGAGTTTCTTGATCAGAATCAAGTTGATCACCCTATCTGGTTAATCACCACCATTGGGTTACAACAATCCCTCATAAATTCTATCGCAGTTTGCAAGTACAAAAGGGGTGAAGGGTTGGTGGAAGGAACGGAGTGTTCCGTGTGCTTGAACCATTTTGGAGAAGATGAAACCTTAAGATTGTTGCCTAAATGCAACCATGCCTTTCACATCGCTTGTATTGACACATGGTTGCGTTCTCATACCAATTGTCCTCTTTGTCGTGCTCCTATTGTCTCAAATTTGGCTTCCACAGAGATCAATTCTAGCAATTCACGAACCAATCAAGAGATTCAAACACAGAATCCGCCAAATGGGGCTGAGTTAAGCAGCGTTGGAACAGAGGATCATCAAGTTTTGAATGATGAGACAGAGATTGGGGTGAGGTCTATGTCTATGGATGCTAGAGTGTGTGAAAGTACGGAGCCTGAAATTGAGCCAATGTTTAAAGCAAGTGGGCCTTCCTCCAATGCAAAATGTCTATGA | 840 | 0.4202 | MARLNRKLFPTLSTINQTQDCPDFCDPACPYNCYSFPDYNFPPPPIYSSHHSSQPTHISSIFIIIASLFSFIFVLVAFYIIKTKFYAHWCGRRVRRNGSPSNITDQEFLDQNQVDHPIWLITTIGLQQSLINSIAVCKYKRGEGLVEGTECSVCLNHFGEDETLRLLPKCNHAFHIACIDTWLRSHTNCPLCRAPIVSNLASTEINSSNSRTNQEIQTQNPPNGAELSSVGTEDHQVLNDETEIGVRSMSMDARVCESTEPEIEPMFKASGPSSNAKCL | 279 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sto5g0531 | 279 | MobiDBLite | consensus disorder prediction | 207 | 233 | - | - | |
| Sto5g0531 | 279 | PANTHER | RING-H2 FINGER PROTEIN ATL51-RELATED | 7 | 244 | IPR044675 | - | |
| Sto5g0531 | 279 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 7 | 244 | - | - | |
| Sto5g0531 | 279 | ProSiteProfiles | Zinc finger RING-type profile. | 151 | 193 | IPR001841 | - | |
| Sto5g0531 | 279 | SUPERFAMILY | RING/U-box | 145 | 199 | - | - | |
| Sto5g0531 | 279 | SMART | ring_2 | 151 | 192 | IPR001841 | - | |
| Sto5g0531 | 279 | CDD | RING-H2_EL5_like | 150 | 193 | - | - | |
| Sto5g0531 | 279 | Pfam | Ring finger domain | 150 | 193 | IPR001841 | - | |
| Sto5g0531 | 279 | SMART | FANCL_C_2 | 147 | 201 | - | - | |
| Sto5g0531 | 279 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 126 | 202 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sto5g0531 | Sto-Chr5 | 3382792 | 3383631 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sto5g0531 | 1 | 197 | C3H Transcription Factor Family | AT1G72220 | 48.673 | 1.92e-63 | 203 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sto5g0531 | - | - | aprc:113847030 | 295.819 |
Event-related genes