Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0506 ATGGGAAGATCCCCTTGTTGTGATGAGAATGGGCTTAAGAAAGGACCCTGGACTCCTGAAGAAGATCAGAAGCTTGTGCAGTACATTGAGAAACATGGCCATGGAAGTTGGAGAGCCCTTCCCAAGCTAGCTGGTCTGAACAGATGTGGAAAAAGCTGTAGGCTAAGGTGGACCAATTATTTAAGGCCAGACATCAAGAGGGGTAAATTTTCCCAAGAAGAAGAGCAAACCATATTGCATCTCCATTCCATCCTTGGAAACAAATGGTCAGCAATTGCATCCCATCTTCCGGGTAGGACTGACAATGAGATAAAGAATTTCTGGAATACTCATCTGAAGAAGAAGTTAATTCAGATGGGGTTTGATCCAATGACCCACCAGCCAAGAACTGACCTTGTTTCCACCTTGCCTTATTTGCTAGCTTTGGCCAACATCACAGACCTTATGGATATTCATCATCAATCATTGGATGATCAGTTGGCAAAGCTTCACTATTTACTCCAATCCACAACTACTTCTAATACCTTCACCACCAATTACGACCAAAATGCCATCACAAACATGGAAGCCATCAACTTGTTAAATTCAATCTCCAATAATAATGTCAAAGAGATTAACCCTTCTGCAGCTATGATAATGAACTACCCACAAAATCCTGCATTTTCTCAAGGGATTGCTATTGCTAGCTCCCAACCACTCCACCACCCAACCATGTTATCTCACATGTCAGACTCAGACCCACCACAAGCAGTCCCTTTCAGCTCCCAATCATGTTTGAATAGTAGTGAAATATCGATGCAAGGTACCAACTTTACAATGATAAGTGAAGGGGATCACACATCTGATCATGACTCTTCATGGATGATCCCAACTATCTCAGGCCTAGGGGATGCCACCAGCTCCTCTTCTAGCTATGGACCCAGATCCTCTTCTTATTGGCCTGATCTTTTTTATGAGGACCAGGACCCCATTATGCATCACCTTTCTTAG 990 0.4323 MGRSPCCDENGLKKGPWTPEEDQKLVQYIEKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILHLHSILGNKWSAIASHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQPRTDLVSTLPYLLALANITDLMDIHHQSLDDQLAKLHYLLQSTTTSNTFTTNYDQNAITNMEAINLLNSISNNNVKEINPSAAMIMNYPQNPAFSQGIAIASSQPLHHPTMLSHMSDSDPPQAVPFSSQSCLNSSEISMQGTNFTMISEGDHTSDHDSSWMIPTISGLGDATSSSSSYGPRSSSYWPDLFYEDQDPIMHHLS 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0506 329 CDD SANT 69 112 IPR001005 -
Sto5g0506 329 SMART sant 66 114 IPR001005 -
Sto5g0506 329 SMART sant 13 63 IPR001005 -
Sto5g0506 329 CDD SANT 16 61 IPR001005 -
Sto5g0506 329 Gene3D - 69 116 - -
Sto5g0506 329 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Sto5g0506 329 PANTHER TRANSCRIPTION FACTOR MYB39-LIKE 1 277 - -
Sto5g0506 329 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Sto5g0506 329 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Sto5g0506 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Sto5g0506 329 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 277 - -
Sto5g0506 329 Gene3D - 11 67 - -
Sto5g0506 329 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Sto5g0506 329 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Sto5g0506 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0506 Sto-Chr5 3210425 3211615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0506 1 320 MYB Transcription Factor Family AT1G34670 53.039 6.96e-112 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto5g0506 Myb_DNA-binding 1.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0506 K09422 - gmx:100811162 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0506 5 3210425 3211615 Sto5g0506 5 3210425 3211615 ECH