Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0495 ATGTCGCACTTTGGGAGATCTGGTCCTCCAGACATCAGGGACACCTATTCCCTCCTCGTCCTCAATATCACTTTCCGTACAACCGCTGACGATCTCTACCCCCTTTTTGACAAGTACGGCAAGGTCGTCGATGTTTTCATCCCCCGAGACCGAAGGACTGGTGAATCACGAGGTTTCGCGTTTGTTCGGTATAAGTATGCAGACGAGGCGCAGAAGGCAGTGGATAAGCTCGATGGAAGAGTCGTTGATGGAAGAGAAATCATGGTTCAATTCGCAAAATACGGACCTAATGCCGAGAAAATGTATGTAGattttagtCACAAAGGCAGGATAGTGGAAGCATCCTCAAAGCCGAGGGGGAGATCAAGAAGCCGCAGCCCTCGTCCTAGGTAA 393 0.4936 MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGESRGFAFVRYKYADEAQKAVDKLDGRVVDGREIMVQFAKYGPNAEKMYVDFSHKGRIVEASSKPRGRSRSRSPRPR 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0495 130 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 87 IPR000504 GO:0003723
Sto5g0495 130 SUPERFAMILY RNA-binding domain, RBD 9 97 IPR035979 GO:0003676
Sto5g0495 130 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 129 - -
Sto5g0495 130 Gene3D - 7 130 IPR012677 -
Sto5g0495 130 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Sto5g0495 130 SMART rrm1_1 17 90 IPR000504 GO:0003723
Sto5g0495 130 PANTHER OS08G0486200 PROTEIN 1 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0495 Sto-Chr5 3154548 3155457 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0495 14 96 Eukaryotic Initiation Factors Gene Family AT3G11400 37.349 2.15e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0495 K12891 - zju:107420854 209.534
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0495 5 3154548 3155457 Sto5g0495 5 3154548 3155457 ECH