Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0485 ATGACTAACGAGCAGAATGTGGTGGGTTGTGATGTGAAATCACGAATGAAGGCATTCATTGCGTTGGTGATGTCCATTTCAAACTCATCTATGTACGGAGCAGCAGTGCCAGAGGCAGTGCTGGGTGAGTTTTTGGGGAAATCCCCCAAGAAGCTAATCAAAAGGCTTGAGCTTGAGGAACCTAAAGTTAACGCCTGGATTGATTCTATGAGAGCTTCCTCTCCAACACGTGTCAAATCCACCATCCCTGCTTCTCAAAATCCACACAATTACACTTGTTGGATTCACCATCATCCTTCAGCGCTCCACGTGTTTGATCAGATCATATGCAAATCCAGAGGAAAAAAGATTGTAGCCTTTCTAGACTACGATGGAACTCTCTCCCCAATTGTTTCAGACCCTGAGAAAGCTTTCATGTCCAAAaagATGAGAGCAACAGTGAAAGACATATCCAGACATTTCCCCACAGCCATCGTGAGTGGGAGGTGCATAGACAAGGTACGTAACTTTGTGAAATTGGAAGAGCTGTACTACGCAGGCAGCCATGGCATGGACATCAAGGGGCCAACCAAAACCCCGACTTCTGAGAAAGCAATCCTGTTCCAAGCTGCGAGTCAATTCTTGCCCATGATCGACGAGGTGTACAAAATACTGGTGGAAAAAACAAAGTGTGTCCCGGGGGCTAAGGTAGAGAATAACAAGTTTTGCTTGTCCGTGCACTTTCGTTGTGTTGACGAAAAGGGGTGGAGTGCATTGGCGGAGCAAGTAAAATCAGTTGTGAATGAGTACCCAAAACTGAGACTTAGCCAAGGAAGAAAAGTGCTAGAGATCCGTCCAAGCATCAAGTGGGACAAGGGCAAAGCTCTTGAGTTCTTGTTGGAGTCACTAGGATATGCTAATTCTAATGACGTATTCCCCATTTATATTGGTGATGATCGAACTGACGAGGATGCTTTTAAGGTTTTACGCAATAGAGGTCAAGGAATTGGGATTGTGGTCTCAACAGTCCCCAAACAAACAGAGGCTTCCTACACTTTGCAAGATCCATCCGAGGTCCAGCAGTTTTTGCGGCGTTTGGTGGATTGGAAAAGAAAGACACTCACTACTCAACGTAACTCCACAAAGTGTAAACCATTTTGTACAATTGTAGATAGACCAAGAACCAATTGA 1170 0.4487 MTNEQNVVGCDVKSRMKAFIALVMSISNSSMYGAAVPEAVLGEFLGKSPKKLIKRLELEEPKVNAWIDSMRASSPTRVKSTIPASQNPHNYTCWIHHHPSALHVFDQIICKSRGKKIVAFLDYDGTLSPIVSDPEKAFMSKKMRATVKDISRHFPTAIVSGRCIDKVRNFVKLEELYYAGSHGMDIKGPTKTPTSEKAILFQAASQFLPMIDEVYKILVEKTKCVPGAKVENNKFCLSVHFRCVDEKGWSALAEQVKSVVNEYPKLRLSQGRKVLEIRPSIKWDKGKALEFLLESLGYANSNDVFPIYIGDDRTDEDAFKVLRNRGQGIGIVVSTVPKQTEASYTLQDPSEVQQFLRRLVDWKRKTLTTQRNSTKCKPFCTIVDRPRTN 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0485 389 PANTHER TREHALOSE-PHOSPHATE PHOSPHATASE C-RELATED 50 369 - -
Sto5g0485 389 Gene3D - 228 375 IPR023214 -
Sto5g0485 389 Gene3D - 117 224 IPR023214 -
Sto5g0485 389 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 119 324 IPR006379 -
Sto5g0485 389 TIGRFAM T6PP: trehalose-phosphatase 115 360 IPR003337 GO:0003824|GO:0005992
Sto5g0485 389 CDD HAD_TPP 120 352 - -
Sto5g0485 389 Pfam Trehalose-phosphatase 120 350 IPR003337 GO:0003824|GO:0005992
Sto5g0485 389 SUPERFAMILY HAD-like 120 364 IPR036412 -
Sto5g0485 389 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 50 369 IPR044651 GO:0004805|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0485 Sto-Chr5 3077723 3079463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0485 120 361 Trehalose Biosynthesis Gene Families AT1G70290 27.626 5.71e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0485 K01087 - gmx:100788641 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0485 5 3077723 3079463 Sto9g3013 9 31108839 31110598 CCT
Sto5g0485 5 3077723 3079463 Sto5g0485 5 3077723 3079463 ECH