Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0481 ATGCTGAAACTTTACTCACAAGGAATCTGGTGGAAAGTCATGGTTGGaaggagaaaagaaaacaagggATCGTCTCTGAGTTTTAGATCTGTTTGTCCAGTTGAAGTCATGGCAGCTACAATGGATTTTTACAGTAGCAGATCATTTCAGTCAGATCCCTTCAGAGGTGAGCTAATGGAAGTTCTGGAACCTTTTATGAAAAGTCCTTCCACaactccctctccctctccctccccCTCCGCAGCCTCATCCCCTTCTTCTAATTCTTCTCTTCCTTCTACCTCCTACTCTCCTTCTTCCAACTTGTTCCAATTTCCTTCTTCCCTCCCTTCATACCCCAATTTCTACGCTGGTGCTTGCTCCACATCCATGGCTCCAGTATTTGCCGATGAGCCATCCAACACCCAATTCTTCTCGGGTTTCGAGCAACCCAGCTCTGTTATTGGGCTCAATCACCTAACCCCTTCTCAGATTAACCAGATCCAAGCCCAGATCCAGCTCCAGGCACAGCAGAACCTTTGTTGGCAGCAAAATACTACTACCCTTGGCTTCTTGAGTCCCAAACCTATTCCCATGAAGCACACGGGTATGCCTCCCAAGCCCACCAAGCTGTACAGAGGTGTAAGGCAACGCCACTGGGGCAAGTGGGTCGCAGAGATCAGACTCCCCAAGAACCGCACGCGTCTTTGGCTCGGAACCTTCGACACCGCTGAGGAAGCCGCACTCGCCTACGACAAGGCCGCTTACAAGCTCCGAGGTGACTTTGCTAGGCTTAACTTTCCCAACCTTCGACACCAAGGATCCTGTGTGGGGGGTGAATTTGGCGAGTACAAGCCTCTTCATTCCTCTGTAGACGCTAAGCTTCAAGCTATTTGCGAAAGCTTGGCTGATCTGCAAAAACAGGGGAAGTCAGGGAAGCCGGCGAGCTCTAAGAGGTCAACTGGGCGATCCAAAGCGGCATCAAAGGGTGCTCAGCCACAGGCGGCGGCCGGCGAAGCGGATCTGAAGGTGGAGAGTTCGTCGTCGGCGGCGGTGACGGAGAGCGAGGGATCTGCAGGATCTTCTTCTCCTTTGTCGGATCTGACTTTCGCGGATGTGAATGAACTTCAGTGGGAGGGTGCTTCGGATAATTTTAATCTGGAGAAGTACCCTTCCTATGAGATCGATTGGGATTCCCTGTGA 1182 0.4941 MLKLYSQGIWWKVMVGRRKENKGSSLSFRSVCPVEVMAATMDFYSSRSFQSDPFRGELMEVLEPFMKSPSTTPSPSPSPSAASSPSSNSSLPSTSYSPSSNLFQFPSSLPSYPNFYAGACSTSMAPVFADEPSNTQFFSGFEQPSSVIGLNHLTPSQINQIQAQIQLQAQQNLCWQQNTTTLGFLSPKPIPMKHTGMPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSCVGGEFGEYKPLHSSVDAKLQAICESLADLQKQGKSGKPASSKRSTGRSKAASKGAQPQAAAGEADLKVESSSSAAVTESEGSAGSSSPLSDLTFADVNELQWEGASDNFNLEKYPSYEIDWDSL 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0481 393 Gene3D AP2/ERF domain 204 262 IPR036955 GO:0003700|GO:0006355
Sto5g0481 393 MobiDBLite consensus disorder prediction 66 93 - -
Sto5g0481 393 CDD AP2 203 263 IPR001471 GO:0003700|GO:0006355
Sto5g0481 393 ProSiteProfiles AP2/ERF domain profile. 204 261 IPR001471 GO:0003700|GO:0006355
Sto5g0481 393 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 37 392 - -
Sto5g0481 393 MobiDBLite consensus disorder prediction 299 359 - -
Sto5g0481 393 Pfam AP2 domain 205 253 IPR001471 GO:0003700|GO:0006355
Sto5g0481 393 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 37 392 - -
Sto5g0481 393 SMART rav1_2 204 267 IPR001471 GO:0003700|GO:0006355
Sto5g0481 393 SUPERFAMILY DNA-binding domain 204 262 IPR016177 GO:0003677
Sto5g0481 393 MobiDBLite consensus disorder prediction 339 359 - -
Sto5g0481 393 MobiDBLite consensus disorder prediction 303 321 - -
Sto5g0481 393 PRINTS Ethylene responsive element binding protein signature 205 216 IPR001471 GO:0003700|GO:0006355
Sto5g0481 393 PRINTS Ethylene responsive element binding protein signature 227 243 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0481 Sto-Chr5 3054767 3059289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0481 37 393 AP2-EREBP Transcription Factor Family AT1G78080 52.688 4.61e-100 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto5g0481 AP2 9.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0481 K09286 - gmx:100800478 376.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0481 5 3054767 3059289 Sto9g3012 9 31097188 31098240 CCT
Sto5g0481 5 3054767 3059289 Sto5g0481 5 3054767 3059289 ECH