Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0467 ATGGGTCGTGTTAAGTTGGAGATTAAGAGAATAGAGAACACCATAAATCGTCAGGTTACTTACTCAAAGCGCAGAAATGGTCTCATTAAGAAAGCCTACGAATTATCCATTCTCTGTGACATTGATATTGCTCTTATCATGTTTTCTCCATCAGGCCGTGTTAGTCACTTTTCCGGCAGAAGAAGGATTGAGGATGTTTTCACTCGTTTCATTAATCTACCTGATCAAGAAAGAGACGGGGCTGTGACCTATCCAAATAATCCAACAGAGCAACCACCCTATCGAAGTCCGGGAGACATCAACTCGGACATTGAGGAGCTTCAACTAGAAGTTGGTAGGTTACAGCAACAGCTTCAAATGACCGAGGAACAGATACGGATATATGAACCCGACCCATTAAAGATGACATCTACGGCGGAGCTTGAATCCAGCGAAAAGCATCTTGTAGATACCTTGACACGTGTCATGCAAAGGAAGGAATATCTGTTAAGCAACCATTTATCTTCATATGATCCATCGGGTATGCAGGGGATGCCGACCACTTTCGAGAATGTAGCTTGGTTGCCGGATGCTAGTCAGAACCATTCCCATATTTTTGACGCATCTGTTTCTTTGGATCCCCTCAGggactTGTCGTCGACGGTTTATGATCCATTTTCACAAGGGACAAGCTCAAATGCAGACCCGCGAAGCATAGGAGAGTGCCACGTGGGAAATCCAACGGATGGAAACCTTCAAGCATGGCCACAAGGATATACATTATATCCTCCCATGCAGCATGAGATGGTGGGGCCAGATATGCAAGAGATGATGCCACCTGGGCAGGTGAACATCCCAATGAACGGCTCACACGTGCAGGTGCAACCACACAGCAATGAAGGTGCAAGCACAGAGTATGAATGTAAACCTCATCATCAGCTAAATGGGCAATGA 933 0.4523 MGRVKLEIKRIENTINRQVTYSKRRNGLIKKAYELSILCDIDIALIMFSPSGRVSHFSGRRRIEDVFTRFINLPDQERDGAVTYPNNPTEQPPYRSPGDINSDIEELQLEVGRLQQQLQMTEEQIRIYEPDPLKMTSTAELESSEKHLVDTLTRVMQRKEYLLSNHLSSYDPSGMQGMPTTFENVAWLPDASQNHSHIFDASVSLDPLRDLSSTVYDPFSQGTSSNADPRSIGECHVGNPTDGNLQAWPQGYTLYPPMQHEMVGPDMQEMMPPGQVNIPMNGSHVQVQPHSNEGASTEYECKPHHQLNGQ 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0467 310 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sto5g0467 310 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sto5g0467 310 MobiDBLite consensus disorder prediction 282 310 - -
Sto5g0467 310 Gene3D - 14 88 IPR036879 GO:0003677|GO:0046983
Sto5g0467 310 MobiDBLite consensus disorder prediction 219 240 - -
Sto5g0467 310 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Sto5g0467 310 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Sto5g0467 310 Coils Coil 104 124 - -
Sto5g0467 310 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sto5g0467 310 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sto5g0467 310 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 262 - -
Sto5g0467 310 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto5g0467 310 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto5g0467 310 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto5g0467 310 MobiDBLite consensus disorder prediction 82 96 - -
Sto5g0467 310 MobiDBLite consensus disorder prediction 78 97 - -
Sto5g0467 310 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 1 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0467 Sto-Chr5 2937192 2940353 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0467 1 287 Type I MADS-box Gene Family AT1G22130 54.088 2.86e-106 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto5g0467 SRF-TF 2.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0467 - - pvu:PHAVU_008G170400g 449.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0467 5 2937192 2940353 Sto5g0467 5 2937192 2940353 ECH