Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0456 ATGAGCTCTGTATCAACTCAATTTGCCATTTCAAGAAGCATGGACATGTATGAGCCTTTCCAGCGAGTTAGTATGTGGGATGAAAGCTTCAAATCTGATGATGGGGACCTAAAATCAGGTGCTACCCCCATATTACTGGCGAACACTACTAGCACCCAGAACAAGTCTCAATGTATTCCTCATCAACCAAGGGGATCTTCTGAAGATGATCAAGACACAAACAAAGCTGTCAATTATAAGGTGGTAAGACGCTTAGCTCAAAATCGCGAGGCTGCCCGAAAAAGTCGACTGCGTAAGAAGGCGTATGTTGAACAATTAGAAACAAGCCGTTTGAAGCTGATGCAATTGGAGCTAGAGATTGAAAAAGCGAGAAAGCAGGGGGGTTTGGGCATAGGTGGTTATGTAGGATCACCTGGAACAATAAACTCAGGGATAGGTGGGTTTGAAATTGAATATGGACATTGGGTTGAAGAGCAAGATAGACAGAATGCAGAACTTAGAAAGGCCTTGCAAAGTAATGGATGTGATCAAGTGCTTCTTCATCTACTGGTTGAGAGTGCATTGAAGCATTACTCAAATCTATTCAAGATGAAAGCAGAAGCTGCAAAGGCTGACATCTTTTATTTACTCTGTGGTGCGTGGAAAACATCAGTAGAGCGTTTTTTTCTCTGGATTGGAGGATCCCGCCCTTCACAGCTTCTAAACATGATAGTGCCACAGCTTGAGCCTCTGAGTGAAGAACAAATAGTGAGTGTGAACAACCTTCGGTTATCGTCTCTGCAAGCAGAAGATGCTCTTTCACAAGGATTGGACAAACTCCAGTACACTCTGCTCCACAACATAGCTTCTGATCCATATCTACTGGGCTTTCAGATGGCTGCTACTCCTACCATGGACAAAATTGAAGCACTAGAGGATTTTGTGAACCAGGCAGATCATCTTAGGGAACAAACCCTACAGCACATGTCTCGCATCCTCACAACCCATCAAGCTGCTCGAGGCTTGCTGCTTTTAGGGGAATACTTTCATCATCTTCGTGCTCTAACTTCTCTTTGGGCCTTCCATCCTCCCAAACTTAAATCACCTAACTTTCCTTTCTGA 1101 0.4387 MSSVSTQFAISRSMDMYEPFQRVSMWDESFKSDDGDLKSGATPILLANTTSTQNKSQCIPHQPRGSSEDDQDTNKAVNYKVVRRLAQNREAARKSRLRKKAYVEQLETSRLKLMQLELEIEKARKQGGLGIGGYVGSPGTINSGIGGFEIEYGHWVEEQDRQNAELRKALQSNGCDQVLLHLLVESALKHYSNLFKMKAEAAKADIFYLLCGAWKTSVERFFLWIGGSRPSQLLNMIVPQLEPLSEEQIVSVNNLRLSSLQAEDALSQGLDKLQYTLLHNIASDPYLLGFQMAATPTMDKIEALEDFVNQADHLREQTLQHMSRILTTHQAARGLLLLGEYFHHLRALTSLWAFHPPKLKSPNFPF 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0456 366 MobiDBLite consensus disorder prediction 49 73 - -
Sto5g0456 366 SMART brlzneu 74 161 IPR004827 GO:0003700|GO:0006355
Sto5g0456 366 Coils Coil 99 126 - -
Sto5g0456 366 PANTHER FACTOR TGA7, PUTATIVE-RELATED 14 355 - -
Sto5g0456 366 ProSiteProfiles DOG1 domain profile. 145 355 IPR025422 GO:0006351|GO:0043565
Sto5g0456 366 PANTHER TRANSCRIPTION FACTOR TGA9 14 355 - -
Sto5g0456 366 SUPERFAMILY Leucine zipper domain 80 113 IPR046347 GO:0003700|GO:0006355
Sto5g0456 366 Gene3D - 80 127 - -
Sto5g0456 366 MobiDBLite consensus disorder prediction 49 64 - -
Sto5g0456 366 Pfam Seed dormancy control 164 238 IPR025422 GO:0006351|GO:0043565
Sto5g0456 366 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 83 98 IPR004827 GO:0003700|GO:0006355
Sto5g0456 366 Pfam bZIP transcription factor 80 109 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0456 Sto-Chr5 2851251 2853215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0456 2 356 Calmodulin-binding Proteins AT1G77920 54.011 1.70e-127 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Sto5g0456 DOG1 1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0456 K14431 - gmx:100526976 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0456 5 2851251 2853215 Sto9g2983 9 30855836 30857879 CCT
Sto5g0456 5 2851251 2853215 Sto5g0456 5 2851251 2853215 ECH