Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0452 ATGCCTCCACCACCGCCACACCCTTGCTGTCTCCATCCCAAAATTTGGCAGGCATGCGCCGGCACATCTGTTCAAATCCCTTCTCTGCATTCTAGGGTTTATTACTTTCCTCAAGGCCATTTTGAGCAAGCCTCCTCCTCTCCTCCAAGCCTTTCCCCTCTTCTCCTGTCCCGCCCACTCATTCCCTCTCGCATATCCTCGCTCCAATTCCTTGCTGATCCTCTCACCGATGAGGTCTTTGCTAAGCTTCTGCTCCATCCGCTTAATGATTTCACCGCCACTTCTGATTACCTTCATCCCGCTGCTGAGCCCCCGGGAGATGATGATAAACTCCTCTCCTTTGCTAAGATTCTCACGCCTTCTGATGCCAACAATGGCGGTGGATTCTCTGTCCCGAGGTACTGTGCCGACTCTATCTTCCCCCCGCTGAACTTGAAATCCGACCGACCAAACCAGACATTGTCAATTACTGACGTTCACGGCGTCGTCTGGGATTTTCGCCATATTTATCGAGGTACGCCTAGGCGGCACTTGCTCACTACTGGATGGAGCAAATTTGTCAACCACAAGAAGTTGGTTGCTGGTGATTCCGTGGTTTTCATGAAGAACTCCAAGGGGGAGATGTTCGTTGGGATTCGCAGAGCTGTACGACAAAGTGCAGGAAATGGTGCCTATTACGCTAGAAGGTTCTCCGAGATCGGTGGCGTGATGACTAAGGTTGAGGAGCAGCAGCAGGAAGAGTGCTATACCGGTTTCAAAGAATTTTCGAGGAACGGGAGGGGTAAGTTATCCGTTAAGGCAGTTGTAAGTGCAGCAGAATCAGCAGCACAAAATTTACCTTTCGAAGTTGTGTATTATCCAAGGGCGGGGTGGTCAGACTTTGTGTTGAAGGCAGAGGTTGTGGAGAAAGCACTGAAGGTCATGTGGACTCCTGGAATGAGAGTCAAAATGGCTATGGAGACAGAGGATTCGTCCAGGATGACCTGGTTTCAGGGGACAATCACTTCAACATCTGCTCCTCCTGATAATGGGCATTGGTGGGGACGGGGTTCTCCGTGGCGTATGCTTCAGAATGCAAAGCAAGTCAGCCCTTGGCAGGTTGAACATATATCCCACTCACCTTTGCTTCATATGGCATTTCCGCCAGCAAAAAAGTTTAGAGCTGCTCAGTATCCAGGGGTGCCAATTGATAAGGAGGAAGACCCCTTCATTACTATGACAAGACTCACTAATTCAGCAATGGTGCACTTGAATCAATCGTTGTTGAATGGTGATACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTGTTTTATGGGTCAAGATTTTCGAACTTACTAAGTGAAAACACTCGTATTTGTACTGCAAGTTCCTTTGAGAACAACACAGTGCCAGAGCTGAAAACTGTGTCAACAGATCTAAACATAGGCAGTTCTCAGTCTGACAACTTGTCACGAGATAGCCTGAGTAGTATTCATTCCATTGGGGCAGAATGTGTTGGGACCCATTGTGGCAACTCAATAAAACGTGGTTCTGGTTCATTTCAGCTATTTGGTAAGATCATTCAAATGAATCAGCCTGCTGAAAGTGGTTTGCACGGTGCTGATTGCACTAGAGATGATGGTAATAAGGTTTGCAATGAAACTGAAAGCATTGACAACCCACTGGATCATTTGACTTACTCAAAATTGGTCAACAACAGGCTTGATGTTCAATGCCCAAAAGCATCGCTAGTTGAAGCATGCTATTTGTGA 1758 0.4761 MPPPPPHPCCLHPKIWQACAGTSVQIPSLHSRVYYFPQGHFEQASSSPPSLSPLLLSRPLIPSRISSLQFLADPLTDEVFAKLLLHPLNDFTATSDYLHPAAEPPGDDDKLLSFAKILTPSDANNGGGFSVPRYCADSIFPPLNLKSDRPNQTLSITDVHGVVWDFRHIYRGTPRRHLLTTGWSKFVNHKKLVAGDSVVFMKNSKGEMFVGIRRAVRQSAGNGAYYARRFSEIGGVMTKVEEQQQEECYTGFKEFSRNGRGKLSVKAVVSAAESAAQNLPFEVVYYPRAGWSDFVLKAEVVEKALKVMWTPGMRVKMAMETEDSSRMTWFQGTITSTSAPPDNGHWWGRGSPWRMLQNAKQVSPWQVEHISHSPLLHMAFPPAKKFRAAQYPGVPIDKEEDPFITMTRLTNSAMVHLNQSLLNGDTFPAGMQGARHDLFYGSRFSNLLSENTRICTASSFENNTVPELKTVSTDLNIGSSQSDNLSRDSLSSIHSIGAECVGTHCGNSIKRGSGSFQLFGKIIQMNQPAESGLHGADCTRDDGNKVCNETESIDNPLDHLTYSKLVNNRLDVQCPKASLVEACYL 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0452 585 PANTHER AUXIN RESPONSE FACTOR 6 584 - -
Sto5g0452 585 CDD B3_DNA 113 214 IPR003340 GO:0003677
Sto5g0452 585 SUPERFAMILY DNA-binding pseudobarrel domain 109 225 IPR015300 -
Sto5g0452 585 Gene3D - 112 216 IPR015300 -
Sto5g0452 585 ProSiteProfiles B3 DNA-binding domain profile. 114 216 IPR003340 GO:0003677
Sto5g0452 585 Pfam Auxin response factor 271 357 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sto5g0452 585 SMART B3_2 114 216 IPR003340 GO:0003677
Sto5g0452 585 Pfam B3 DNA binding domain 114 215 IPR003340 GO:0003677
Sto5g0452 585 Gene3D - 309 374 - -
Sto5g0452 585 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 584 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0452 Sto-Chr5 2820494 2826004 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0452 11 552 B3 DNA Binding Superfamily AT1G77850 48.115 3.05e-159 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sto5g0452 B3 4.8e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0452 - - jre:109012447 676.011