Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0451 ATGCCTCAGCCGCCGCCTCGCCGTCTCCACCCCAAAATTTGGCGAGCATGCGCCGGTGCATCTGTTCAAATCCCTGCTCTGCATTCTAGGGTTTATTACTTCCCTCAAGGCCATTTGGAGCAAGCCTCTTCGTCTCCTCCATATCTCTCCCCTCTTCTCCTCTCCAGGCCACTCATTCTCTGCCGCGTATCCTTCGTTGAATTCCTCGCTGATCCTGTCACGGATGAGGTTTTCGCTAAGCTTCTACTCCATCCGCTCAATGATTTCACGGCCACCCGTGATCACCTTAATCCCTTCGGTGAATCCGCCGATGCACCTGGAGATGACAAGGTCGTGTCGTTTGCCAAGATTCTGACGCCTTCTGATGCCAATAATGGCGGTGGATTCTCTGTTCCGAGGTACTGTGCTGACTCCATTTTCCCGCAGCTGAACTTTCAGTTGGTCCGGCCAAACCAGACATTACCTGTCACCGATGTTCACGGCTTTGTCTGGGAATTTTGCCACATTTATCGAGGCACGCCTAGGCGGCACCTGCTCACTACTGGATGGAGCAAGTTTGTCAATCATAAGAAGTTGATCGCCGGTGATTCCGTGGTTTTCATGAAGAACTCCAAGAGGGAGATGTTCGTTGGGATTCGCAGAGCTGTGCGATTGAGTGTAGGAAATGGCGGTGATTACGCCAGAAGGTTCTCCGAGATCGGCGGTTTGAGAACTACTGTTGAGGAGGAGGAGCAGGAAGAGCGCTATACTTGTTTCGGAGGGTTTTCAAGAAACGGGAAGGGGAAATTGTCCGCTAAGGCAGTTGTAGACGCAGCAGAATCGGCAGCTCAAAATATGCCTTTCGAAGTTGTGTACTATCCAAGGGCAGGGTGGTCGGACTTTGTGTTGAAGGAAGAGGTTGTGGAGGAAGCACTGAAAGTCGTATGGACTCCTGGAATGAGAATCAAAATGGCTATGGAGACAGAGGATTCGTCCAGGATGACCTGGTTTCAAGGGACAGTCTCTTGGGCATCTGCTCCTGATAGTGGGCCTTGGCGGGGTTCTCCTTGGCGTATGCTTCAGATTGCATGGGATGAACCTGAAGTATTGCAGAATGCAAAGAGAGTCAGCCCTTGGCAGGTTGAACGTATTTCCTCAACACCTCTGTTTCATACAGCATTCCCCCCCTCAAAAAGGTTTCGAGCTGATCATTATCGTGGGGTGCCAGTTGATAGAGAGGAAGACCCCTTGTTTATTATGACAAGTGTTACTAATTCAACAGTGGGACGCTTGAATCAATCATTGTTGAATTATACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCTGTGTCAAAATTTTCTAACTTTCCAATTGATAATACTCATCTGTGCACTTCTAGTTCCTTTGGGAACAACACAGTGCCAAAGTTGAAAACTGTGTCAATAGATCTAAACATAGGCAGCTCTCAATCTGACAAATTATCTCTAGATAGTCGGAGTAGTTTGCATTCCTTTGACACAGCATTTGTTGGGACACATAGCTGCAACTCGACCAAACTTAGCACTGGTTCATTTCAGCTATTTGGTAAGATCATTCAAATGAATCAGCCTGTTGAAAGTGGTTGGCACGGTGCTGGTTGCACAGGGGATGATGGTAACAAGGGTTGCATTGGTACTGAAATAATTGACAACCCATTGGATCATTCGACTTACTTGAAATTGCTCAATAGGCTTGACGTTCAATGCTGTAAAGCATCCACAGTGGAGGCATGGTCTTTGAATCTGACCGAATTCATAACAGGTGAAGGTACTCAAGCAGGGAAGAAACAGTATTCTAGACCTTGCAGGAGTAATATCGCTAATATTATACATATGAAAATCCTTTCTGCTTCTGGATGGGGGCGAATCAAGTTTGATAAGGGAAATTAA 1920 0.4719 MPQPPPRRLHPKIWRACAGASVQIPALHSRVYYFPQGHLEQASSSPPYLSPLLLSRPLILCRVSFVEFLADPVTDEVFAKLLLHPLNDFTATRDHLNPFGESADAPGDDKVVSFAKILTPSDANNGGGFSVPRYCADSIFPQLNFQLVRPNQTLPVTDVHGFVWEFCHIYRGTPRRHLLTTGWSKFVNHKKLIAGDSVVFMKNSKREMFVGIRRAVRLSVGNGGDYARRFSEIGGLRTTVEEEEQEERYTCFGGFSRNGKGKLSAKAVVDAAESAAQNMPFEVVYYPRAGWSDFVLKEEVVEEALKVVWTPGMRIKMAMETEDSSRMTWFQGTVSWASAPDSGPWRGSPWRMLQIAWDEPEVLQNAKRVSPWQVERISSTPLFHTAFPPSKRFRADHYRGVPVDREEDPLFIMTSVTNSTVGRLNQSLLNYTFPAGMQGARHDLFSVSKFSNFPIDNTHLCTSSSFGNNTVPKLKTVSIDLNIGSSQSDKLSLDSRSSLHSFDTAFVGTHSCNSTKLSTGSFQLFGKIIQMNQPVESGWHGAGCTGDDGNKGCIGTEIIDNPLDHSTYLKLLNRLDVQCCKASTVEAWSLNLTEFITGEGTQAGKKQYSRPCRSNIANIIHMKILSASGWGRIKFDKGN 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0451 639 CDD B3_DNA 113 214 IPR003340 GO:0003677
Sto5g0451 639 Gene3D - 111 216 IPR015300 -
Sto5g0451 639 SMART B3_2 114 216 IPR003340 GO:0003677
Sto5g0451 639 ProSiteProfiles B3 DNA-binding domain profile. 114 216 IPR003340 GO:0003677
Sto5g0451 639 Pfam Auxin response factor 271 354 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sto5g0451 639 Gene3D - 309 381 - -
Sto5g0451 639 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 5 588 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sto5g0451 639 SUPERFAMILY DNA-binding pseudobarrel domain 106 227 IPR015300 -
Sto5g0451 639 Pfam B3 DNA binding domain 114 215 IPR003340 GO:0003677
Sto5g0451 639 PANTHER AUXIN RESPONSE FACTOR 5 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0451 Sto-Chr5 2814598 2818917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0451 7 551 B3 DNA Binding Superfamily AT1G77850 49.910 1.62e-171 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sto5g0451 B3 2.7e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0451 - - qsu:112025063 710.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0451 5 2814598 2818917 Sto9g2976 9 30815657 30823615 CCT
Sto5g0451 5 2814598 2818917 Sto5g0451 5 2814598 2818917 ECH