Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0425 ATGAGCAAACCCAGAACTCATAGGAAACCCAGCAAGAATGCCATTGCTAACCATAACGAAAAGCCACAGAAACAACCCTCTTGGGCTGTGCTACATGAAGAAAGGGTTCTTCCGGAAGACCAAAACGGCAAGAAATGCAAGAAGATGAAATCATGCTCTGGCTCGCTCTGTAATAACACCAAGATCATGGCTAGGCCCGAAACGGGATGCCCCGATGTCCACAAGAAACGGGTCTCATTGGGTGCATGTAGTAGTACCAACAACGAAGCTTCCAGCAGATCCATGAAAGCTCCTTCTCACGAACCCAACGGCGCcgtttctgcttcttcttcttcactatcAGTATCTTCTAATTCTTCTGCCAGTGGAACCTCCTTCAGAGGAATGCCCTTCAGGAGACTCTCTGGTTGCTACGAGTGCCGTATGGTGGTTGACCCTGTTCTGGGTTTCACCAGAGACCCATCTCTGCGTGGTAGCATTTGTTCTTGCCCTGATTGTGGCGAGATCTTCACGAAAGCTGAAAGCTTGGAGCTTCATCAGGCCGTTAAACACGCAGTGTCTGAACTGGGAGCGGAAGATACAAGCAAGAACATAGTAGAAATCATATTCCACTCAAGCTGGCTAAAGAAACAATCCCCAGTGTGCAAAATCGAGCGCATCCTGAAAGTCCACAACACCCAGAAGACAATATCTCGATTCGAAGAGTACAGAGAGTGCATAAAAGCGAAAGCCACGAAGAAGCACCCACGTTGCATAGCAGATGGGAACGAGCTACTTAGATTCCACTGCACGACCTTGGTGTGCTCACTGGGGCTAAACGGATCCTCCAACCTATGCAACTCAATCCCGCAATGCAATGTTTGTAACATAATAAAGAATGGGTTGAAGTTGAAGGTAGGAGGGAAGGGGATATTAACGACGGCGACAAGCGGGAAGGCACACGACAAAGCAGAGGTTGAAGAAGGGGATGAGAATAGAGCGATGTTGGTGTGTAGAGTGATAGCTGGGAGGGTGAAGAAGAACGTGGAAGGAAGCAATAGCATGGGCATGGAGGAGTATGATTCGGTGGGAGGGAGTGTGGGGGCTTATTCTAATTTGGACGAGTTGTATGTGTTCAACCCAAGAGCCATATTGCCTTGTTTTGTTGTCATCTATAGAGGCTTTTGA 1167 0.4713 MSKPRTHRKPSKNAIANHNEKPQKQPSWAVLHEERVLPEDQNGKKCKKMKSCSGSLCNNTKIMARPETGCPDVHKKRVSLGACSSTNNEASSRSMKAPSHEPNGAVSASSSSLSVSSNSSASGTSFRGMPFRRLSGCYECRMVVDPVLGFTRDPSLRGSICSCPDCGEIFTKAESLELHQAVKHAVSELGAEDTSKNIVEIIFHSSWLKKQSPVCKIERILKVHNTQKTISRFEEYRECIKAKATKKHPRCIADGNELLRFHCTTLVCSLGLNGSSNLCNSIPQCNVCNIIKNGLKLKVGGKGILTTATSGKAHDKAEVEEGDENRAMLVCRVIAGRVKKNVEGSNSMGMEEYDSVGGSVGAYSNLDELYVFNPRAILPCFVVIYRGF 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0425 388 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 44 386 - -
Sto5g0425 388 ProSitePatterns Zinc finger C2H2 type domain signature. 161 184 IPR013087 -
Sto5g0425 388 ProSiteProfiles Zinc finger C2H2 type domain profile. 161 189 IPR013087 -
Sto5g0425 388 MobiDBLite consensus disorder prediction 83 125 - -
Sto5g0425 388 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 44 386 - -
Sto5g0425 388 SUPERFAMILY ADP-ribosylation 186 387 - -
Sto5g0425 388 MobiDBLite consensus disorder prediction 1 29 - -
Sto5g0425 388 Gene3D - 185 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0425 Sto-Chr5 2657958 2659330 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0425 126 386 C2H2 Transcription Factor Family AT1G75710 54.983 2.19e-103 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto5g0425 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0425 - - gmx:100817333 529.25