Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0422 ATGGCTGAGGCTCCGAGATCTACTGGCACTGTCAGATGGTTCAACGCCTACAAAGGTTTTGGATTCATTGGCCCTGATGATGGTGGCGACGATCTCTTTGTGCATCAGACTTCCATCCGATCCGATGGCTATCGCACCTTATCTGAGGGTCAGCCTGTCGAGTTCCTTCTCGATTACGGTGAAGATGGACGAACCAAAGCCGTTGATGTCACTGCTCTCGTGAGATCTCGCCGTTTTCCTGGCCCTCGTGGTGGCACTGCAAGAGGCTTTCGAGGCAGAGGAGGTGGATATGGTGGGTACGGCGGCCGCTATGGTGGCGGAGATGGTTATGGTTATGGTAGAGGTGGGCGGAGAGGTGGAGGCtacagtggtggtggtggtggtggtggtAATTGTGGCCGAATGGGCCATTTGGCGAGAGATTGTTATCACGGTGCCGGTGGTGGCATTCGGAGACGCGGTGGCGGTAGTGGCGGCGGAGGTGGAGGAGGAAAGTGCTTTCACTGCGGGGAGGAGGGGCATTTTGCGAGGGAATGTGTCAACGTTGAGAATTGA 555 0.5333 MAEAPRSTGTVRWFNAYKGFGFIGPDDGGDDLFVHQTSIRSDGYRTLSEGQPVEFLLDYGEDGRTKAVDVTALVRSRRFPGPRGGTARGFRGRGGGYGGYGGRYGGGDGYGYGRGGRRGGGYSGGGGGGGNCGRMGHLARDCYHGAGGGIRRRGGGSGGGGGGGKCFHCGEEGHFARECVNVEN 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0422 184 Gene3D - 130 184 - -
Sto5g0422 184 ProSitePatterns Cold-shock (CSD) domain signature. 20 39 IPR019844 -
Sto5g0422 184 Gene3D - 1 71 IPR012340 -
Sto5g0422 184 SUPERFAMILY Retrovirus zinc finger-like domains 151 182 IPR036875 GO:0003676|GO:0008270
Sto5g0422 184 Pfam 'Cold-shock' DNA-binding domain 8 72 IPR002059 GO:0003676
Sto5g0422 184 SMART c2hcfinal6 131 144 IPR001878 GO:0003676|GO:0008270
Sto5g0422 184 SMART c2hcfinal6 165 181 IPR001878 GO:0003676|GO:0008270
Sto5g0422 184 ProSiteProfiles Cold-shock (CSD) domain profile. 6 72 IPR002059 GO:0003676
Sto5g0422 184 SUPERFAMILY Nucleic acid-binding proteins 5 72 IPR012340 -
Sto5g0422 184 SMART csp_8 8 73 IPR011129 GO:0003676
Sto5g0422 184 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 181 - -
Sto5g0422 184 CDD CSP_CDS 8 71 IPR002059 GO:0003676
Sto5g0422 184 ProSiteProfiles Zinc finger CCHC-type profile. 165 179 IPR001878 GO:0003676|GO:0008270
Sto5g0422 184 Pfam Zinc knuckle 131 142 IPR001878 GO:0003676|GO:0008270
Sto5g0422 184 Pfam Zinc knuckle 164 179 IPR001878 GO:0003676|GO:0008270
Sto5g0422 184 PRINTS Cold shock protein signature 9 24 IPR002059 GO:0003676
Sto5g0422 184 PRINTS Cold shock protein signature 30 39 IPR002059 GO:0003676
Sto5g0422 184 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0422 Sto-Chr5 2646263 2646847 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Sto5g0422 CSD 2e-22 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0422 - - jre:109013657 154.451