Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0412 ATGCAATtcatAATTGGGGATGGTAACTTGAATAAAACTCAGAAAATCATGCCTCAAAGTCACAGGCGAAATCAGAGGAGGAACAGGGAATCCAGGAAATGGTATGAACGGATTTGTTTGGTGGCGATTACAGATAGTTCGGCATCAGAATCAGAAACTGATGACGGCAGCGGAAGGAGTGATACAGCGGACGACCTTTCTCGTCCGCCGCCAAACCCAGAGAGTGAAAATACCACACCCCACTCAGACACTGATGAAATTGATTGGCGATGTCCTCCACCGCCACCGCCGCCGCCTCTGCCCGGTGAGGATGAAGGAGTTGGAGAATATTATTACAGAAGCGGTGGGAGAAAAGAGAGTGAGATTAGGAGTATAAGAATAACGGAGGAgtataaaagagagagatattCAGAGTGTCCGATATGCAAGGAGGAGTTGAAAGTGGGAGAAGAAGCAAGGGAGTTAAGATGTAACCATTCATTCTGCTCTGCTAATTGCATTGATCAATGGCTCGCCATCAAACAAAACTGCCCTCTTTGCTGGCGTACCttgtattcttcttcttcttctttttcaccTGCTCCATGGGGCTGGGAGTATTCTTATGGGTCCACATTCACGCCTCATCATACTGCATTACAAGGTGCCGACGAATATTACTCTGCCTATGAATCTCCTCCTCCCCCTGCTTCTCATACCTAG 702 0.4459 MQFIIGDGNLNKTQKIMPQSHRRNQRRNRESRKWYERICLVAITDSSASESETDDGSGRSDTADDLSRPPPNPESENTTPHSDTDEIDWRCPPPPPPPPLPGEDEGVGEYYYRSGGRKESEIRSIRITEEYKRERYSECPICKEELKVGEEARELRCNHSFCSANCIDQWLAIKQNCPLCWRTLYSSSSSFSPAPWGWEYSYGSTFTPHHTALQGADEYYSAYESPPPPASHT 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0412 233 MobiDBLite consensus disorder prediction 44 113 - -
Sto5g0412 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 193 IPR013083 -
Sto5g0412 233 MobiDBLite consensus disorder prediction 89 103 - -
Sto5g0412 233 Pfam Ring finger domain 138 180 IPR001841 -
Sto5g0412 233 SMART ring_2 139 180 IPR001841 -
Sto5g0412 233 MobiDBLite consensus disorder prediction 1 31 - -
Sto5g0412 233 PANTHER OS02G0248440 PROTEIN 30 187 - -
Sto5g0412 233 SUPERFAMILY RING/U-box 138 188 - -
Sto5g0412 233 ProSiteProfiles Zinc finger RING-type profile. 139 180 IPR001841 -
Sto5g0412 233 MobiDBLite consensus disorder prediction 1 18 - -
Sto5g0412 233 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 30 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0412 Sto-Chr5 2584735 2586817 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0412 122 180 C3H Transcription Factor Family AT1G68180 45.763 6.51e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0412 K11982 - ghi:107928075 67.781