Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0410 ATGCACCCTTGGCAGTCTCTAATCAGCTCATACTTCAAATTACTAGTGAGAAGAAAGGATGGATCATGGGACATGGATGAAGATGATATTGATATGCATACCCAGTACTTTTGTAGCAAACACAAGATCCAGCCAGAGGCGTCCAAGGAaatgcagaagaagaagaagaagtacaaGGGAGTGAGAATGAGAAGCTGGGGGTCATGGGTCTCAGAGATTAGAGCACCAAACCAGAAAACAAGAATATGGTTAGGCTCTTATTCTACCCCTGAAGCTGCTGCTAGAGCCTATGATGCTGCACTTCTATGCCTTAAAGGCTCCTCAGCCAACCTCaatttcccttcttcttcttcttcttcacacttCATTCCTCAAGACACCATCATGTCCCCCAAATCTATCCAGAGAGTTGCTGCTGCAGCTGCTGCTAATAGTTTTGCTGAAATTCCCACTACCCCACCTTCTCCTCCTCCTGCTTCCACCTCTTCCTCCTCTGTCTCCTCTCCCTCTGATCACATTGATGATGATGTTTCAGTAATGCCATCTTTTCTGCCTTATCATCACCCATATGAACCAATGCCTATCATGGATTCTTCTTTATCTTGGGACGGCCTTGATGCACTACAATCCCCTAAATATGTTGATCACATGCTAAGTGGTGCCTTTTTCGACATTGATTCACACCAGCTGCTTGATGATTTCTACGAAGATAATGACATTCGCTTATGGAGCTTCTGCTGA 741 0.4184 MHPWQSLISSYFKLLVRRKDGSWDMDEDDIDMHTQYFCSKHKIQPEASKEMQKKKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTPEAAARAYDAALLCLKGSSANLNFPSSSSSSHFIPQDTIMSPKSIQRVAAAAAANSFAEIPTTPPSPPPASTSSSSVSSPSDHIDDDVSVMPSFLPYHHPYEPMPIMDSSLSWDGLDALQSPKYVDHMLSGAFFDIDSHQLLDDFYEDNDIRLWSFC 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0410 246 MobiDBLite consensus disorder prediction 147 172 - -
Sto5g0410 246 Gene3D AP2/ERF domain 56 115 IPR036955 GO:0003700|GO:0006355
Sto5g0410 246 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Sto5g0410 246 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Sto5g0410 246 CDD AP2 60 114 IPR001471 GO:0003700|GO:0006355
Sto5g0410 246 SUPERFAMILY DNA-binding domain 57 115 IPR016177 GO:0003677
Sto5g0410 246 Pfam AP2 domain 57 106 IPR001471 GO:0003700|GO:0006355
Sto5g0410 246 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF014 40 246 - -
Sto5g0410 246 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
Sto5g0410 246 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
Sto5g0410 246 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 40 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0410 Sto-Chr5 2570516 2576253 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0410 58 245 AP2-EREBP Transcription Factor Family AT1G21910 54.808 1.82e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto5g0410 AP2 3.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0410 - - gmx:100788144 215.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0410 5 2570516 2576253 Sto5g0410 5 2570516 2576253 ECH