Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0398 ATGGAAAGATCTGGGTGCCAGGAGTTTAGCCTGAAGAACTTGGCGGAATCATTAAAATCACAAGGTAATAAGGCAATGCAGTCCAAGCAATATCCTGATGCAATTGAGTTGTATAATTGTGCAATTGCGACATGTGAAGAGAATGCTGTCTACTACTGCAACAGGGCAGCTGCTTACACTCAGATCAACAAATATTTGGAAGCAATCCAAGATTGTCTTAGATCTATAGAGATTGACCCAAACTATAGCAAGGCATACAGTCGTCTGGGTTTGGCTTATTATGCTCAGGGAAATTACAGAGATGCCATTGATAAAGGGTTTAGAAAAGCCTTGCAGTTGGATCCAAATAATGAGTCTGTTAAAGAAAATATACGGGTTGCCGAGCAAAAATTGATAGAAGAGCAACAACGTGCAGCTGGCAATCAGAATTCAAGATCATCTCAAGAGCACCAGAACCAATCTGCACGAGGTTCAAGAAGCAATGCAGCACCACCTCCATTTAACGCAATGCCTTTTAATGCCAACGATCTTGCAAGCATGTTTATGAACATAGCTGCAAATACTGCCAACGCGTATCAAGGACAGCATCCTCGGGAAAGCCAAGGAGAGGATAGCAATACCAGTTCAACTAATGAACCTGAAATAAGAATTGGGGGCAATATTGATTTAAACTTGGACCAAATGCCCGAGGATCTGACGGGGGCTTTGAGATCTGTGATGGAAATGTTTTCTGGGGCAGGCACTGGGCAATCGCAAGATCATTTTGATGGAAGAACTGCTCCAAACTAA 789 0.4259 MERSGCQEFSLKNLAESLKSQGNKAMQSKQYPDAIELYNCAIATCEENAVYYCNRAAAYTQINKYLEAIQDCLRSIEIDPNYSKAYSRLGLAYYAQGNYRDAIDKGFRKALQLDPNNESVKENIRVAEQKLIEEQQRAAGNQNSRSSQEHQNQSARGSRSNAAPPPFNAMPFNANDLASMFMNIAANTANAYQGQHPRESQGEDSNTSSTNEPEIRIGGNIDLNLDQMPEDLTGALRSVMEMFSGAGTGQSQDHFDGRTAPN 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0398 262 MobiDBLite consensus disorder prediction 192 215 - -
Sto5g0398 262 ProSiteProfiles TPR repeat profile. 83 117 IPR019734 GO:0005515
Sto5g0398 262 SUPERFAMILY TPR-like 14 128 IPR011990 GO:0005515
Sto5g0398 262 MobiDBLite consensus disorder prediction 192 219 - -
Sto5g0398 262 Pfam Tetratricopeptide repeat 49 82 IPR001440 GO:0005515
Sto5g0398 262 Gene3D Tetratricopeptide repeat domain 10 163 IPR011990 GO:0005515
Sto5g0398 262 PANTHER LD24721P 1 253 - -
Sto5g0398 262 MobiDBLite consensus disorder prediction 135 161 - -
Sto5g0398 262 ProSiteProfiles TPR repeat profile. 49 82 IPR019734 GO:0005515
Sto5g0398 262 MobiDBLite consensus disorder prediction 135 171 - -
Sto5g0398 262 PANTHER LD24721P 1 253 - -
Sto5g0398 262 SMART tpr_5 83 117 IPR019734 GO:0005515
Sto5g0398 262 SMART tpr_5 15 48 IPR019734 GO:0005515
Sto5g0398 262 SMART tpr_5 49 82 IPR019734 GO:0005515
Sto5g0398 262 Coils Coil 117 137 - -
Sto5g0398 262 Pfam Tetratricopeptide repeat 84 117 IPR013105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0398 Sto-Chr5 2469652 2473992 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0398 14 113 U-box Gene Family AT3G07370 30.000 4.69e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0398 K16365 - gmx:100799770 383.259