Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0388 ATGGCAGGTTTCAGCGGTGACGAAACTGCTCCTTTCTTTGGCTTTCTCGGAGCCGCTGCTGCCCTCGTCTTCTCCTGTATGGGAGCTGCTTATGGAACTGCCAAGAGTGGAGTAGGTGTGGCTTCCATGGGAGTTATGCGGCCTGAGCTGGTCATGAAATCCATTGTACCAGTAGTTATGGCTGGAGTTCTGGGTATTTATGGATTAATTATAGCTGTTATTATTAGTACAGGAATAAACCCCAAGGCTAAATCATACTATCTCTTTGATGGCTATGCCCACTTGTCATCTGGCCTTGCCTGTGGCCTTGCTGGACTCTCTGCTGGAATGGCAATTGGAATTGTTGGTGATGCTGGAGTGAGATATACGGGGACACATTCTTCTAGTGCTAGATACCTTACCTGTTTTTTGTCATCTTTGAAAATTACTGCTGTTTCTGAGAAATTGTTTCCTTACATTCCTGCTTTACTGCAGTCCTTTTGggcAAACGCCCAGCAGCCAAAACTGTTTGTTGGGATGATACTTATTCTGATCTTTGCTGAAGCTCTTGCTCTCTACGGCCTAATTGTGGGTATCATCCTCTCATCCCGAGCAGGCCAATCTCGTGCTGAATAG 615 0.4569 MAGFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYTGTHSSSARYLTCFLSSLKITAVSEKLFPYIPALLQSFWANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0388 204 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 12 120 IPR011555 GO:0033179|GO:0046961|GO:1902600
Sto5g0388 204 Pfam ATP synthase subunit C 96 127 IPR002379 GO:0015078|GO:0033177|GO:1902600
Sto5g0388 204 Pfam ATP synthase subunit C 164 194 IPR002379 GO:0015078|GO:0033177|GO:1902600
Sto5g0388 204 Pfam ATP synthase subunit C 16 75 IPR002379 GO:0015078|GO:0033177|GO:1902600
Sto5g0388 204 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 123 - -
Sto5g0388 204 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 161 204 - -
Sto5g0388 204 CDD ATP-synt_Vo_c_ATP6C_rpt1 12 79 - -
Sto5g0388 204 Gene3D - 10 157 IPR035921 -
Sto5g0388 204 Gene3D - 158 201 IPR035921 -
Sto5g0388 204 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 123 - -
Sto5g0388 204 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 161 204 - -
Sto5g0388 204 SUPERFAMILY F1F0 ATP synthase subunit C 86 127 IPR035921 -
Sto5g0388 204 SUPERFAMILY F1F0 ATP synthase subunit C 13 76 IPR035921 -
Sto5g0388 204 CDD ATP-synt_Vo_c_ATP6C_rpt2 88 195 - -
Sto5g0388 204 PRINTS Vacuolar ATP synthase 16kDa subunit signature 29 53 IPR000245 GO:0033179|GO:0046961|GO:1902600
Sto5g0388 204 PRINTS Vacuolar ATP synthase 16kDa subunit signature 55 79 IPR000245 GO:0033179|GO:0046961|GO:1902600
Sto5g0388 204 PRINTS Vacuolar ATP synthase 16kDa subunit signature 106 132 IPR000245 GO:0033179|GO:0046961|GO:1902600
Sto5g0388 204 SUPERFAMILY F1F0 ATP synthase subunit C 160 195 IPR035921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0388 Sto-Chr5 2428657 2430472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0388 2 204 Primary Pumps ATPases(2) AT1G75630 82.266 4.78e-110 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0388 K02155 - gmx:100777816 266.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0388 5 2428657 2430472 Sto5g0388 5 2428657 2430472 ECH