Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0378 ATGGCATCAGCAGATCTACAGCTACCACCAGGCTTCAGATTCCATCCAACGGATGAGGAGCTCGTGATGCACTATCTCTGCCGTAAATGTACGTCTCAGCAAATCGCAGTTCCAATTATTGCCGAAATTGACCTTTACAAGTACGATCCATGGGACCTTCCCGGCATGGCTTTGTACGGAGAGAAAGAGTGGTACTTCTTCTCACCGAGAGATCGCAAATATCCGAACGGTTCAAGGCCGAACCGGGCGGCTGGAACCGGGTACTGGAAGGCAACTGGTGCAGATAAGCCCATCGGTCATCCGAAACCGGTAGGGATCAAGAAAGCTCTGGTGTTTTACGCAGGGAAAGCGCCAAAAGGAGAGAAAACCAATTGGATCATGCACGAATACCGTCTCGCCGATGTGGATCGCTCTGCTCGGAAAAAGAACAGCTTAAGGCTAGATGACTGGGTGCTTTGCCGTATCTACAACAAGAAAGGCACCATCGAGAAACAAGAACAAAGTCCAAGTACTTTTAGCAGGAAAGCAGAATCATCAGAAATGGAGGACAAGAAACCGGATCTTTTACCACGTGGCGGCGCATTTCCACCGCCGGCGCCACCTTCTCAAGCGCCGGCGTCGGGGATGACCGATTACATGTACTTTGACACGTCGGATTCGGTGCCGAAGCTGCACACGGACTCAAGTTGCTCGGAGCACGTGGTGTCGCCAGAGTTCGCGAGCGAGGTGCAGAGCGAACCCAAGTGGAATGAGTGGGAGATGAAGAACCTTGAGTTTCCATATAATTACGTGGATGCCATGCTGGGCAATAATAGCTTCGGGTCGCAGTTCGAGAGCGGGAATAATCAGATGTCGCCATTGCAGGACATGTTCATGTACCTGCCGAAGCCGTACTGA 897 0.5162 MASADLQLPPGFRFHPTDEELVMHYLCRKCTSQQIAVPIIAEIDLYKYDPWDLPGMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGHPKPVGIKKALVFYAGKAPKGEKTNWIMHEYRLADVDRSARKKNSLRLDDWVLCRIYNKKGTIEKQEQSPSTFSRKAESSEMEDKKPDLLPRGGAFPPPAPPSQAPASGMTDYMYFDTSDSVPKLHTDSSCSEHVVSPEFASEVQSEPKWNEWEMKNLEFPYNYVDAMLGNNSFGSQFESGNNQMSPLQDMFMYLPKPY 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0378 298 Gene3D NAC domain 17 162 IPR036093 GO:0003677|GO:0006355
Sto5g0378 298 Pfam No apical meristem (NAM) protein 9 132 IPR003441 GO:0003677|GO:0006355
Sto5g0378 298 PANTHER NAC TRANSCRIPTION FACTOR 56 1 273 - -
Sto5g0378 298 PANTHER NAC DOMAIN-CONTAINING PROTEIN 2-LIKE 1 273 - -
Sto5g0378 298 MobiDBLite consensus disorder prediction 163 211 - -
Sto5g0378 298 SUPERFAMILY NAC domain 5 158 IPR036093 GO:0003677|GO:0006355
Sto5g0378 298 ProSiteProfiles NAC domain profile. 8 158 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0378 Sto-Chr5 2345353 2346919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0378 6 298 NAC Transcription Factor Family AT1G01720 71.761 7.30e-149 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto5g0378 NAM 3.6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0378 - - gmx:100805768 500.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2956 9 30701162 30705098 Sto5g0378 5 2345353 2346919 CCT
Sto5g0378 5 2345353 2346919 Sto5g0378 5 2345353 2346919 ECH