Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0375 ATGGAGAACCCAGGGAAGAGGATTACAGTTTCTGATTGCCAAGGATTGTTGGTTGGGGTTGATAATGAAGATTTAACTCGAATTTTCCGGTTCCTTGATCACTGGGGAATCATCAATTATTGTGCTGAGGTGCCCAGTCATGAGCCTTGGAGCAATGAGTCCTACCTAAAGGATGAGTCAAGTGGCGAGATCCGTGTGCCATCAGATGCCTTAAAATCTATAGATAGTTTGATCAAATTTGACAAACCCAAGTGTAAATTCAAAGCAGACGAAATCTGTTCATCATTGACAACTCACAATGCCGATATATCTGATTTGGAAGGCAGAATAAGAGAGCATCTATCTGAAAGTCATTGCAATCATTGTTCTCGTCCTCTTTCTGCTGTATACTATCAGTCACAAAAAGAGGCTGATATTCTACTCTGCATTGATTGCTTCCATGATGGGAGATTTGTCATCGGTCATTCAAGTATAGATTTTGTAAGGGTAGATTCAACTAGGGATTATACTGATCTAGATGGAGATAGTTGGACTGATCAAGAAACCTTGCTGCTGCTTGAGGCAATAGAGATTTACAATGAGAATTGGAATGAAATCGCTGAGCATGTTGGTACCAAGTCAAAAGCACAATGTATTCTTCATTTTCTCCGTCTGCCCATGGAAGAAGGAAAACTGGAAAATATCAATGTTCCAAAAATTGCATTGTCATCCAGTAAGACAAGTAGAGATGATTGTGGAAGACCACGGTCAAATTTGGATGGAGATTTAGCAGGACCTAGCCAGTGCAGTGAAGCTGACAGCAGGCTTCCTTTTGCAAATTCTGAAAATCCTGTTATGGCGATGGTTGCCTTTTTGGCCTCTGCTGTTGGACCAAGAGTAGCTGCTGCCTGCGCTCATGCAGCATTAGCAGAATTGTCGGAGGATAATTCTGGTAGTACATCACAGACGGAAGCACAGGCGCATGGTAACAGGATGAACATGGAAGGCGTACATGGTAGAGAGTGCGGTCCTCTTGGAGAAATTGCAAACTCAAATCAGCAAAAAGAGGATGAGACAAAAGCACTTGGTTCACGGGGTCCAAATGAGGGTGAGGCCGCCCCTCTATCTGCTGAGAAAGTTAAAGATGCTGCTAAAGCAGGGTTGTCTGCTGCAGCAATGAAAGCTAAACTGTTTGCTGATCATGAAGAAAGAGAGATTCAGAGGCTATGTGCTAATATTATTAATCATCAGTTGAAAAGATTGGAATTGAAGCTCAAGCAATTTGCTGAAATTGAAACATTATTGATGAAAGAATGTGAACAAGTGGAGAAGGCGAGGCAAAGGTTTGCTGCTGAACGTTCCCGCATTTTATCCGCATGGCTTGGATCTGGTGCAGCCACAAACACATCAGGTGTTGGTCCTTCCACGGTTAACAGCAATAACGGCAACAGTAGGCAACAAATGTCCTTTGGTTCTCCTTCACAGCCTAGCGTCTCAGGATACAGCAGTGGCCAACCAGTTCATCCACACATGTCCTTCGTCCCCCGGCCTTCAATGTTTGGATTAGGGCAAAGACTACCGCTTTCTATGATACAACAATCACAGTCAACTTCTTCAAATCCCATGTTCAATGCCCCTGGTAATGTCCAGCCTACTAGCAATCATCCATTGTTGAGGCCTGTATCTGGTACTAACTCTGGCTTAGGTTAA 1689 0.434 MENPGKRITVSDCQGLLVGVDNEDLTRIFRFLDHWGIINYCAEVPSHEPWSNESYLKDESSGEIRVPSDALKSIDSLIKFDKPKCKFKADEICSSLTTHNADISDLEGRIREHLSESHCNHCSRPLSAVYYQSQKEADILLCIDCFHDGRFVIGHSSIDFVRVDSTRDYTDLDGDSWTDQETLLLLEAIEIYNENWNEIAEHVGTKSKAQCILHFLRLPMEEGKLENINVPKIALSSSKTSRDDCGRPRSNLDGDLAGPSQCSEADSRLPFANSENPVMAMVAFLASAVGPRVAAACAHAALAELSEDNSGSTSQTEAQAHGNRMNMEGVHGRECGPLGEIANSNQQKEDETKALGSRGPNEGEAAPLSAEKVKDAAKAGLSAAAMKAKLFADHEEREIQRLCANIINHQLKRLELKLKQFAEIETLLMKECEQVEKARQRFAAERSRILSAWLGSGAATNTSGVGPSTVNSNNGNSRQQMSFGSPSQPSVSGYSSGQPVHPHMSFVPRPSMFGLGQRLPLSMIQQSQSTSSNPMFNAPGNVQPTSNHPLLRPVSGTNSGLG 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0375 562 ProSiteProfiles SWIRM domain profile. 1 49 IPR007526 GO:0005515
Sto5g0375 562 ProSiteProfiles Myb-like domain profile. 169 219 IPR001005 -
Sto5g0375 562 MobiDBLite consensus disorder prediction 461 511 - -
Sto5g0375 562 CDD SANT 176 218 IPR001005 -
Sto5g0375 562 Pfam Myb-like DNA-binding domain 176 218 IPR001005 -
Sto5g0375 562 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3C 1 561 - -
Sto5g0375 562 MobiDBLite consensus disorder prediction 338 371 - -
Sto5g0375 562 Gene3D - 1 44 IPR036388 -
Sto5g0375 562 MobiDBLite consensus disorder prediction 461 499 - -
Sto5g0375 562 MobiDBLite consensus disorder prediction 238 261 - -
Sto5g0375 562 Pfam SWIRM-associated region 1 379 449 IPR032451 -
Sto5g0375 562 ProSiteProfiles Zinc finger ZZ-type profile. 114 168 IPR000433 GO:0008270
Sto5g0375 562 MobiDBLite consensus disorder prediction 524 562 - -
Sto5g0375 562 ProSiteProfiles SANT domain profile. 172 223 IPR017884 -
Sto5g0375 562 SMART sant 173 221 IPR001005 -
Sto5g0375 562 PANTHER SWI/SNF COMPLEX-RELATED 1 561 - -
Sto5g0375 562 SUPERFAMILY Homeodomain-like 174 227 IPR009057 -
Sto5g0375 562 SUPERFAMILY Homeodomain-like 2 42 IPR009057 -
Sto5g0375 562 Gene3D - 173 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0375 Sto-Chr5 2326859 2331058 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0375 119 215 EF-hand Containing Proteins AT3G07740 34.906 2.36e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sto5g0375 SWIRM-assoc_1 3.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0375 K11649 - gmx:100780440 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0375 5 2326859 2331058 Sto5g0375 5 2326859 2331058 ECH