Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sto5g0374 | ATGGCGCCAACCCTGCAAAGCTCTCAGCCATGGGTGGAGAAATATCGGCCGAAGCAAGTCAGAGACGTAGCTCACCAGGACGAAGTGGTTCGAGTACTCACAAACACCCTAGAAACTGCAAGTTTCCCGCACATGCTCTTCTATGGTCCGCCCGGTACCGGAAAAACCACAACGGCACTTGCCATTGCTCATCAGCTTTTCGGGCCTGAGCTCTACAAGTCTAGGGTACTTGAGCTGAATGCAAGTGATGATCGTGGGATTAATGTTGTTCGGACGAAGATTAAAAATTTTGCCGCAGTGGCTGTTGGTAATCAGCGAAAGAGTGGCTATCCATGTCCACCATATAAGATTATTGTTCTTGATGAGGCAGATTCGATGACTGAAGATGCTCAGAATGCTCTGAGGCGCACAATGGAAACTTATTCTAAAGTCACAAGATTCATTTTTATATGCAATTACGTTAGCAGGATTATCGAACCACTTGCTTCAAGGTGTGCAAAATTCAGGTTCAAGCAACTGTCAGAAGATATTATGAGCAGCCGAATATTGTACATTTGCCAAGAAGAAGGACTCAATCTTGATGCTGAGACTCTTTCAACCCTGAGCTCTATCTCTCAAGGTGATCTTCGTCGGGCTATTACATACTTGCAGTCAGCTGCCCGCTTATTTGGATCTTCCATTTCCTCGCAGGACCTGATTTCTGTATCAGGGGTCATTCCAATAGAAATTGTGCAGGCACTTCTCACAGCATGCAAAAGTGGGAATTTTGATTCAGCACACAAGGAGGTCAACAATTTCATAGCAGAGGGATATCCAGTCTCTCAGATGCTAACCCAGTTATTTGAGGCCATAGTTGAAGCAGATGATATATCAGATGAACAGAAGGCAAGAATAACCATGAAATTGGGTGAAGCCGATAAGTGCCTTGTTGATGGAGCTGATGAATACTTGCAGCTCCTGGATGTGACCAGCAATACAATTCGAGCCCTTGGTAACATGCCTGAAGTATTTGAGCATGACAGTTAG | 1026 | 0.4493 | MAPTLQSSQPWVEKYRPKQVRDVAHQDEVVRVLTNTLETASFPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGNQRKSGYPCPPYKIIVLDEADSMTEDAQNALRRTMETYSKVTRFIFICNYVSRIIEPLASRCAKFRFKQLSEDIMSSRILYICQEEGLNLDAETLSTLSSISQGDLRRAITYLQSAARLFGSSISSQDLISVSGVIPIEIVQALLTACKSGNFDSAHKEVNNFIAEGYPVSQMLTQLFEAIVEADDISDEQKARITMKLGEADKCLVDGADEYLQLLDVTSNTIRALGNMPEVFEHDS | 341 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sto5g0374 | 341 | CDD | AAA | 26 | 165 | - | - | |
| Sto5g0374 | 341 | SMART | AAA_5 | 41 | 174 | IPR003593 | - | |
| Sto5g0374 | 341 | Gene3D | - | 2 | 173 | IPR027417 | - | |
| Sto5g0374 | 341 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 240 | 323 | IPR008921 | GO:0003677|GO:0006260 | |
| Sto5g0374 | 341 | Gene3D | - | 240 | 328 | - | - | |
| Sto5g0374 | 341 | CDD | HLD_clamp_RFC | 173 | 232 | - | - | |
| Sto5g0374 | 341 | PANTHER | REPLICATION FACTOR C SUBUNIT 4 | 6 | 328 | - | - | |
| Sto5g0374 | 341 | Pfam | ATPase family associated with various cellular activities (AAA) | 45 | 170 | IPR003959 | GO:0005524|GO:0016887 | |
| Sto5g0374 | 341 | Gene3D | - | 175 | 239 | - | - | |
| Sto5g0374 | 341 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 8 | 232 | IPR027417 | - | |
| Sto5g0374 | 341 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 6 | 328 | - | - | |
| Sto5g0374 | 341 | Pfam | Replication factor C C-terminal domain | 240 | 322 | IPR013748 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sto5g0374 | Sto-Chr5 | 2313157 | 2317052 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sto5g0374 | 1 | 337 | Core DNA Replication Machinery Family | AT1G21690 | 77.876 | 0.0 | 543 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sto5g0374 | K10755 | - | egr:104450918 | 585.489 |