Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0373 ATGGCGCCAACCCTGCAAAGCTCTCAGCCATGGGTGGAGAAATATCGGCCGAAGCAAGTCAGAGACGTAGCTCACCAGGACGAAGTGGTTCGAGTACTCACAAACACCCTAGAAACTGCAAGTTTCCCGCACATGCTCTTCTATGGTCCGCCCGGTACCGGAAAAACCACAACGGCACTTGCCATTGCTCATCAGCTTTTCGGGCCTGAGCTCTACAAGTCTAGGGTACTTGAGCTGAATGCAAGTGATGATCGTGGGATTAATGTTGTTCGGACGAAGATTAAAAATTTTGCCGCAGTGGCTGTTGGTAATCAGCGAAAGAGTGGCTATCCATGTCCACCATATAAGATTATTGTTCTTGATGAGGCAGATTCGATGACTGAAGATGCTCAGGCatgttttctttatttgttaTTACTTATTCCGAACTTTGTTTTTAAGAATGCTCTGAGGCGCACAATGGAAACTTATTCTAAAGTCACAAGATTCATTTTTATATGCAATTACGTTAGCAGGATTATCGAACCACTTGCTTCAAGGTGTGCAAAATTCAGGTTCAAGCAACTGTCAGAAGATATTATGAGCAGCCGAATATTGTACATTTGCCAAGAAGAAGGACTCAATCTTGATGCTGAGACTCTTTCAACCCTGAGCTCTATCTCTCAAGGTGATCTTCGTCGGGCTATTACATACTTGCAGTCAGCTGCCCGCTTATTTGGATCTTCCATTTCCTCGCAGGACCTGATTTCTGTATCAGGGGTCATTCCAATAGAAATTGTGCAGGCACTTCTCACAGCATGCAAAAGTGGGAATTTTGATTCAGCACACAAGGAGGTCAACAATTTCATAGCAGAGGGATATCCAGTCTCTCAGATGCTAACCCAGTTATTTGAGGCCATAGTTGAAGCAGATGATATATCAGATGAACAGAAGGCAAGAATAACCATGAAATTGGGTGAAGCCGATAAGTGCCTTGTTGATGGAGCTGATGAATACTTGCAGCTCCTGGATGTGACCAGCAATACAATTCGAGCCCTTGGTAACATGCCTGAAGTATTTGAGCATGACAGTTAG 1074 0.4376 MAPTLQSSQPWVEKYRPKQVRDVAHQDEVVRVLTNTLETASFPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGNQRKSGYPCPPYKIIVLDEADSMTEDAQACFLYLLLLIPNFVFKNALRRTMETYSKVTRFIFICNYVSRIIEPLASRCAKFRFKQLSEDIMSSRILYICQEEGLNLDAETLSTLSSISQGDLRRAITYLQSAARLFGSSISSQDLISVSGVIPIEIVQALLTACKSGNFDSAHKEVNNFIAEGYPVSQMLTQLFEAIVEADDISDEQKARITMKLGEADKCLVDGADEYLQLLDVTSNTIRALGNMPEVFEHDS 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0373 357 Gene3D - 191 255 - -
Sto5g0373 357 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 6 344 - -
Sto5g0373 357 Pfam Replication factor C C-terminal domain 256 338 IPR013748 -
Sto5g0373 357 PANTHER REPLICATION FACTOR C SUBUNIT 4 6 344 - -
Sto5g0373 357 Gene3D - 256 344 - -
Sto5g0373 357 CDD AAA 26 181 - -
Sto5g0373 357 CDD HLD_clamp_RFC 189 248 - -
Sto5g0373 357 SMART AAA_5 41 190 IPR003593 -
Sto5g0373 357 SUPERFAMILY post-AAA+ oligomerization domain-like 256 339 IPR008921 GO:0003677|GO:0006260
Sto5g0373 357 Pfam ATPase family associated with various cellular activities (AAA) 45 186 IPR003959 GO:0005524|GO:0016887
Sto5g0373 357 Gene3D - 2 189 IPR027417 -
Sto5g0373 357 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 248 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0373 Sto-Chr5 2295970 2299865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0373 1 353 Core DNA Replication Machinery Family AT1G21690 74.366 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0373 K10755 - egr:104450918 575.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0373 5 2295970 2299865 Sto5g0373 5 2295970 2299865 ECH