Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0352 ATGGTAATTGAGGATGGACTGAGCAGTGCCAATAACTTGGAATGTGCTGGTGGGGTTCAGTGTGTGAAAGCAGATGGGAATTATGTTGCTGGAGGGTGCAATGGTGGGATGGAATTTATTCGAACTTACAAGAGGCGTAAACATGTAAAGATGAGTTCAGAAAGCAAAGTTCAAGAAGATTGCAGAGCATATGTGGAATCTGCAAGACATTTAGCAGACCAGGCTGGGAAAGAACCGTGTGATGTATCTGTATCTGTAGGCAATACTTTCCACAAGAAATTATGTGATGATAAAGGTGGCATGGAGAGATGCACATGGGAGGCACACATACATCACCCTAAGATTAATTGTGCCACTACATTTGAGAAAGCTTGTAAATTTGACAAAGATGGGCAAGAATACTCTTCGCAATTGGCGTCGCAATCTCATAGGTTACGGAATGAAGCTAATGGGAATGGAGATGTATTTGGTAATGGATGTGCTAGTTTTGCTGACTCAGATGGCCATGCTATGACTGAGATGTGTCAGAATGTGCTCTGTAACATCTTAGCTTCTGAAAAATTCAGTTCATTGTGTAAGGTGCTAAGTGAACACTTTCAAGGAATGAAGCCTGAAAGTGTCCTTGATTTTAGTGTCATAAACTCAAGGATGAAGGAGCAGGCTTATGAACAGTCACCTACACTTTTCTTGTCAGATGTTCAACAGGAGGTCTTTGGAGGGTTTGCTGTAGGCTTATCTGATGGGTCTGATTCTGTTATATGGGGAAGAAAGCTTGAAGACACTGGAAATAAGATTGTTTCTCTTGCCAAGAGCCTCTCCAACATGTCAAGAACTTCCTACTGTGAGAAGGTGGGAGTTTCAGGGCACAGCACATTTGAAGATGAAATAAAAGAGTTGCATAACCGGGAATCTGACTCTCACTTGAAACCAGAGCAGACAGAAGACAGTGGTATGTATAAAATCTACACTTGCAGGCGCTGTGGAGACAAGGCAGATGGGATAGACTGTTTGGTTTGTGATTCATGTGAGGATATCTACCATGTATCCTGTATTGAGCCAGCTGTTAAAGTGATACCCCATAAAAGCTGGTTCTGTGTCACTTGTGCTGCTAGTGGAATTGGATTTCCAGATGAGAATTGTGTGGTATGCGAAAGGCTTAATGTTCCAAATACACTGTGCAACACAGTTGGTGATGAAAGCTTACCTACAGATGAGGGAACACTTCAGGAATTAGAAGAGAATTCAAATTGTACTCATGCTGAGGTTCTATTACCCAGAAGTGGGAAAACCGAATGTATTTGTAAAATTTGTGGTACTGAGGTGGATGGTGAATATAAGAAATTTTGTGGCCACTCCTGCTGCCCCAATAAATTCTACCATTTAAGGTGTTTGACAACTAAGCAGTTAAAGTCATATGGTCCCTGTTGGTACTGCCCTTCTTGTTTATGCCAATTTTGCCTCACTGATAGAGATGATGATCAAATTGTTCTCTGTGATGGATGTGATCATGCATACCACATCTATTGCTTGCAACCTCCTCGAACTTCTATACCAAAAGGGAAATGGTTCTGCAGAAAATGTAATGCAGGGATCGAAGCCATACACCAGGCAAAGAAGGCATATGAAAGTAACAAGCTCCGAAAAACAGGAAAGAATGATTTAAAGCCAATTGGAAGTTTCAAAAAGGTAAGGAATATTGGATATGGGAGGGAATTGGAGAAAGGTGAAGGAATGGACATGCTTTTAACTGCTGCCAAAACTCTGAATAATGAAGATATGATTTTATCTACAGCCAATACTTAG 1803 0.4115 MVIEDGLSSANNLECAGGVQCVKADGNYVAGGCNGGMEFIRTYKRRKHVKMSSESKVQEDCRAYVESARHLADQAGKEPCDVSVSVGNTFHKKLCDDKGGMERCTWEAHIHHPKINCATTFEKACKFDKDGQEYSSQLASQSHRLRNEANGNGDVFGNGCASFADSDGHAMTEMCQNVLCNILASEKFSSLCKVLSEHFQGMKPESVLDFSVINSRMKEQAYEQSPTLFLSDVQQEVFGGFAVGLSDGSDSVIWGRKLEDTGNKIVSLAKSLSNMSRTSYCEKVGVSGHSTFEDEIKELHNRESDSHLKPEQTEDSGMYKIYTCRRCGDKADGIDCLVCDSCEDIYHVSCIEPAVKVIPHKSWFCVTCAASGIGFPDENCVVCERLNVPNTLCNTVGDESLPTDEGTLQELEENSNCTHAEVLLPRSGKTECICKICGTEVDGEYKKFCGHSCCPNKFYHLRCLTTKQLKSYGPCWYCPSCLCQFCLTDRDDDQIVLCDGCDHAYHIYCLQPPRTSIPKGKWFCRKCNAGIEAIHQAKKAYESNKLRKTGKNDLKPIGSFKKVRNIGYGRELEKGEGMDMLLTAAKTLNNEDMILSTANT 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0352 600 ProSitePatterns Zinc finger PHD-type signature. 324 368 IPR019786 -
Sto5g0352 600 PANTHER HISTONE ACETYLTRANSFERASE 92 591 - -
Sto5g0352 600 SUPERFAMILY FYVE/PHD zinc finger 314 371 IPR011011 -
Sto5g0352 600 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 425 533 IPR013083 -
Sto5g0352 600 ProSiteProfiles Zinc finger PHD-type profile. 321 371 IPR019787 -
Sto5g0352 600 PANTHER D4, ISOFORM A 92 591 - -
Sto5g0352 600 SUPERFAMILY FYVE/PHD zinc finger 482 533 IPR011011 -
Sto5g0352 600 SMART PHD_3 323 369 IPR001965 -
Sto5g0352 600 SMART PHD_3 433 482 IPR001965 -
Sto5g0352 600 SMART PHD_3 485 528 IPR001965 -
Sto5g0352 600 Gene3D - 254 371 - -
Sto5g0352 600 ProSiteProfiles Zinc finger PHD-type profile. 480 530 IPR019787 -
Sto5g0352 600 Pfam PHD-finger 324 369 IPR019787 -
Sto5g0352 600 Pfam PHD-finger 483 528 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0352 Sto-Chr5 2123978 2127693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0352 482 551 C2H2 Transcription Factor Family AT3G01460 45.833 1.03e-13 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sto5g0352 PHD 2.5e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0352 - - gmx:100786712 659.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0352 5 2123978 2127693 Sto9g2858 9 30029495 30035367 CCT
Sto5g0352 5 2123978 2127693 Sto5g0352 5 2123978 2127693 ECH